View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2866_low_1 (Length: 1411)
Name: NF2866_low_1
Description: NF2866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2866_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 435
Target Start/End: Complemental strand, 16158675 - 16158254
Alignment:
| Q |
13 |
catcaacaatttaatttcattcaacaaagcccaaacacactaacattcagagagaaaatatgataacatccttatttaccaactaaatagtcataatcgt |
112 |
Q |
| |
|
||||| |||||||||||||||||| ||| | |||||||| ||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| |
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|
| T |
16158675 |
catcagcaatttaatttcattcaagaaaacacaaacacaataacattcagagagaaagtatggaaacatgcttatttaccaactaaatagtcataatcgt |
16158576 |
T |
|
| Q |
113 |
aggtatgagcacaaacatcagcaagcttggtcaaagaaacaccatatttaggaatggtgaagccttcggagacctgaaccttggttatcatctggaagat |
212 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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|
| T |
16158575 |
aggtatgagcgcaaacatcaacaagtttggtcaaagaaacaccatatttaggaatggtgaagctttcggagacctgaaccttggttgtcatctggaagat |
16158476 |
T |
|
| Q |
213 |
aatcttatatgggtgttgtgtagtacgataagagccagcacttggagcaacagaaaaacatgataggttgtagaccttcccctcacttaatttggattgg |
312 |
Q |
| |
|
||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
16158475 |
aatcttatatgggtgttgtgtggtacggtatgagccagcacttggagcaacagaaaaacatgataggttgtagaccttcccctcacttaatctggactgg |
16158376 |
T |
|
| Q |
313 |
aaaacatatagcaactgcttccttacactggcatgaatcttggatcccttcacatttaaaacagcaaaataacaaaatttaggtcatggttcatactgca |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||| ||||| || |
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|
| T |
16158375 |
aaaacatatagcaactgcttccttacactggtatgaatcttggatcccttcacatttaaaacaacacaataacaaaa-ttaggtcatggttgatactaca |
16158277 |
T |
|
| Q |
413 |
tcatgatcaagcaaaataaataa |
435 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
16158276 |
tcatgaccaagcaaaataaataa |
16158254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1121 - 1393
Target Start/End: Original strand, 39450794 - 39451068
Alignment:
| Q |
1121 |
atgatggattattatcatgacagctccacattcctcttttgtaatctttttgctttaaaactaacacccttctctttttgtttcatttgactatcaatga |
1220 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |||||||||| || |||||||||||||| |||||||||||||||||||||||||| ||| |
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|
| T |
39450794 |
atgatgggttattatcatgatagctccacattcctcttttataatctttttactctaaaactaacacccatctctttttgtttcatttgactatcactga |
39450893 |
T |
|
| Q |
1221 |
ttgataggatccgaaaaagcaataacaatat--caaagaattgatgaaaaaagaaaactatatttgcatctatgaacaaattttcggaagatcaagaagc |
1318 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
39450894 |
ttgataggatccgaaaaagcaataacaatatatcaaagaattgatgaaaaaagaaaactatatttgcatctatgaacaaaattttggaagatcaagaagc |
39450993 |
T |
|
| Q |
1319 |
tgctgcagttaattgattgattgacaacgttgcatcactccctactctcacctttagaacctgtcaacaacccat |
1393 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| |
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|
| T |
39450994 |
tgctgcaattaattaattgattgacaacgttgcagcactccccactctcaccttcagaacctgtcaacaacccat |
39451068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 8e-43
Query Start/End: Original strand, 1121 - 1387
Target Start/End: Complemental strand, 32622706 - 32622443
Alignment:
| Q |
1121 |
atgatggattattatcatgacagctccaca--ttcctcttttgtaatctttttgctttaaaactaacacccttctctttttgtttcatttgactatcaat |
1218 |
Q |
| |
|
|||| ||| |||||||||||||| ||||| |||| || |||||||| ||||| | |||||||||||||| ||||||||||||| ||| || ||| | |
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|
| T |
32622706 |
atgaaggaatattatcatgacagtaccacaaattcccctcttgtaatcattttgttctaaaactaacacccatctctttttgttttattggattattgtt |
32622607 |
T |
|
| Q |
1219 |
gattgataggatccgaaaaagcaataacaatatcaaagaattgatgaaaaaagaaaactatatttgcatctatgaacaaattttcggaagatcaagaagc |
1318 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||||||||||||||||| |||| |||| |||||||||||||||||||||| ||||||||||||| |
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|
| T |
32622606 |
cattgat-----ccgaaaaagcaatgataatatcaaagaattgatgaaaaatgaaagctatctttgcatctatgaacaaattttatgaagatcaagaagg |
32622512 |
T |
|
| Q |
1319 |
tgctgcagttaattgattgattgacaacgttgcatcactccctactctcacctttagaacctgtcaaca |
1387 |
Q |
| |
|
|| || |||||||| |||||| ||| || |||| ||||||||| ||| |||| |||||||||||||| |
|
|
| T |
32622511 |
tgttgtagttaattaattgatcaacagcgctgcaacactccctaatcttgccttcagaacctgtcaaca |
32622443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 1121 - 1189
Target Start/End: Original strand, 39468296 - 39468364
Alignment:
| Q |
1121 |
atgatggattattatcatgacagctccacattcctcttttgtaatctttttgctttaaaactaacaccc |
1189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||| |
|
|
| T |
39468296 |
atgatggattattatcatgacagctccacattcctcttttataatctttttactctaaaactaacaccc |
39468364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1121 - 1393
Target Start/End: Original strand, 13404199 - 13404471
Alignment:
| Q |
1121 |
atgatggattattatcatgacagctccacattcctcttttgtaatctttttgctttaaaactaacacccttctctttttgtttcatttgactatcaatga |
1220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
13404199 |
atgatggattattatcatgacagctccacattcctcttttgtaatctgtttgctttaaaactaacacccttctctttttgtttcatttgactatcattga |
13404298 |
T |
|
| Q |
1221 |
ttgataggatccgaaaaagcaataacaatatcaaagaattgatgaaaaaagaaaactatatttgcatctatgaacaaattttcggaagatcaagaagctg |
1320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13404299 |
ttgataggatccgaaaaagcaataacaatatcaaagaattgatgaaaaaagaaaactatatttgcatctatgaacaaattttcggaagatcaagaagctg |
13404398 |
T |
|
| Q |
1321 |
ctgcagttaattgattgattgacaacgttgcatcactccctactctcacctttagaacctgtcaacaacccat |
1393 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13404399 |
ctgcaattaattaattgattgacaacgttgcatcactccctactctcaccttcagaacctgtcaacaacccat |
13404471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 1121 - 1393
Target Start/End: Complemental strand, 8234994 - 8234722
Alignment:
| Q |
1121 |
atgatggattattatcatgacagctccacattcctcttttgtaatctttttgctttaaaactaacacccttctctttttgtttcatttgactatcaatga |
1220 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8234994 |
atgatggattattatcatgacaactccacattcctcttttgtaatctgtttgctttaaaactaacacccttctctttttgtttcatttgactatcactga |
8234895 |
T |
|
| Q |
1221 |
ttgataggatccgaaaaagcaataacaatatcaaagaattgatgaaaaaagaaaactatatttgcatctatgaacaaattttcggaagatcaagaagctg |
1320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8234894 |
ttgataggatccgaaaaagcaataacaatatcaaagaattgatgaaaaaagaaaactatatttgcatctatgaacaaattttcggaagatcaagaagctg |
8234795 |
T |
|
| Q |
1321 |
ctgcagttaattgattgattgacaacgttgcatcactccctactctcacctttagaacctgtcaacaacccat |
1393 |
Q |
| |
|
||||| |||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8234794 |
ctgcaattaattaattaattgacaacgttgcatcactccctactctcaccttcagaacctgtcaacaacccat |
8234722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 207; E-Value: 1e-112
Query Start/End: Original strand, 1123 - 1393
Target Start/End: Original strand, 36981347 - 36981616
Alignment:
| Q |
1123 |
gatggattattatcatgacagctccacattcctcttttgtaatctttttgctttaaaactaacacccttctctttttgtttcatttgactatcaatgatt |
1222 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||| |
|
|
| T |
36981347 |
gatggattattattatgacaactccacattcctcttttgtaatctttttgctttaaaactaacacccatatctttttgtttcatttgactatcaccgatt |
36981446 |
T |
|
| Q |
1223 |
gataggatccgaaaaagcaataacaatatcaaagaattgatgaaaaaagaaaactatatttgcatctatgaacaaattttcggaagatcaagaagctgct |
1322 |
Q |
| |
|
|||||||| | |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36981447 |
gataggattcaaaaaagcaataataatatcaaagaattgatgaaaaaa-aaaactatatttgcatctatgaacaaattttcggaagatcaagaagctgct |
36981545 |
T |
|
| Q |
1323 |
gcagttaattgattgattgacaacgttgcatcactccctactctcacctttagaacctgtcaacaacccat |
1393 |
Q |
| |
|
||| |||||| ||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
36981546 |
gcaattaattaattgattgacaacgttgcagcactccctactctcactttcagaacctgtcaacaacccat |
36981616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 187 - 355
Target Start/End: Complemental strand, 33436583 - 33436415
Alignment:
| Q |
187 |
tgaaccttggttatcatctggaagataatcttatatgggtgttgtgtagtacgataagagccagcacttggagcaacagaaaaacatgataggttgtaga |
286 |
Q |
| |
|
|||||||||||| |||||||||| | |||||| ||||||||| | || || |||||||| ||| |||||||||||||||| ||||| || | | |||| |
|
|
| T |
33436583 |
tgaaccttggttgtcatctggaaaacaatcttgtatgggtgtagggtggtgcgataagaaccaacacttggagcaacagagaaacaggacatctcataga |
33436484 |
T |
|
| Q |
287 |
ccttcccctcacttaatttggattggaaaacatatagcaactgcttccttacactggcatgaatcttgg |
355 |
Q |
| |
|
|||| ||||| || || ||| |||||||||||| | | |||||||| ||||||||||| ||||||| |
|
|
| T |
33436483 |
cctttccctcgctcaacttgctttggaaaacataaaaaagttgcttcctcacactggcatggatcttgg |
33436415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 600 - 681
Target Start/End: Complemental strand, 33436249 - 33436168
Alignment:
| Q |
600 |
ggcacctcccacatcctcagcacacgaaccttgatcctccaaccatccttaccagcagcaatctcagaaacggaatgaaaaa |
681 |
Q |
| |
|
||||||||||| | ||||| |||||||||||||| |||| ||||||| ||| ||||||||||| ||||||||||||| |
|
|
| T |
33436249 |
ggcacctcccaaagcctcaaaacacgaaccttgattttccatccatcctcaccgagggcaatctcagacacggaatgaaaaa |
33436168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 1240 - 1384
Target Start/End: Complemental strand, 38629600 - 38629450
Alignment:
| Q |
1240 |
caataacaatatcaaagaattgatgaaaaaagaaaa----ctatatttgcatctatgaacaaattttcggaagatcaagaagctgctgcagttaat--tg |
1333 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||| ||| |||| ||||||||||||||| || ||||||||||||| ||||||||||||| | |
|
|
| T |
38629600 |
caataaaagtatcaaagaattgatgaaaaaagaaagaaagctacctttgaatctatgaacaaattatctgaagatcaagaaggtgctgcagttaattata |
38629501 |
T |
|
| Q |
1334 |
attgattgacaacgttgcatcactccctactctcacctttagaacctgtca |
1384 |
Q |
| |
|
||| ||| |||||| | || | ||||||| ||||||||| ||||||||||| |
|
|
| T |
38629500 |
attaattaacaacgctacaacgctccctaatctcaccttcagaacctgtca |
38629450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 184 - 355
Target Start/End: Original strand, 33615110 - 33615281
Alignment:
| Q |
184 |
acctgaaccttggttatcatctggaagataatcttatatgggtgttgtgtagtacgataagagccagcacttggagcaacagaaaaacatgataggttgt |
283 |
Q |
| |
|
||||||||||||||| |||| ||||| | |||||| ||||||||| || || |||||||| ||| |||||||||||||||| |||||||| | | | |
|
|
| T |
33615110 |
acctgaaccttggttgtcatttggaaaacaatcttgtatgggtgtgaggtggtgcgataagaaccaacacttggagcaacagagaaacatgacatctgat |
33615209 |
T |
|
| Q |
284 |
agaccttcccctcacttaatttggattggaaaacatatagcaactgcttccttacactggcatgaatcttgg |
355 |
Q |
| |
|
| ||||| ||||| || || ||| |||||||||||| || | ||||||||| |||| |||||| ||||||| |
|
|
| T |
33615210 |
aaacctttccctcgctcaacttgctttggaaaacataaagaagctgcttcctcacaccggcatggatcttgg |
33615281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 6e-16
Query Start/End: Original strand, 600 - 680
Target Start/End: Original strand, 33615429 - 33615509
Alignment:
| Q |
600 |
ggcacctcccacatcctcagcacacgaaccttgatcctccaaccatccttaccagcagcaatctcagaaacggaatgaaaa |
680 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||| |||| ||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
33615429 |
ggcacctcccaaagcctcagaacacgaaccttgattttccatccatccttaccagtggcaatctcagacacggaatgaaaa |
33615509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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