View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2866_low_2 (Length: 245)
Name: NF2866_low_2
Description: NF2866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2866_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 33 - 229
Target Start/End: Complemental strand, 40061495 - 40061303
Alignment:
| Q |
33 |
taattcaagatatgatcacgataattatacaattgtaaaggaaaattattaaaataaataacgttaagagtaagatattgaaaaaagacttgaacaaaaa |
132 |
Q |
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| T |
40061495 |
taattcaatatatgatcgcgataattatacaaatgtaaaggaaaattattaaaataaataacgttaagagtaagatattgaaaaaagacttgaataaaaa |
40061396 |
T |
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| Q |
133 |
gttataatatttataaggactaaaaacatatatttaattttnnnnnnnntaatattatcgtttggatcaaacatccatgaccattgtattaaaaatc |
229 |
Q |
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| T |
40061395 |
gttactatatttataaggattaaaaatatatatttaattaaaaaaaaaacaa----atcgtttggatcaaacatccatgaccattgtattaaaaatc |
40061303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 42787696 - 42787658
Alignment:
| Q |
125 |
aacaaaaagttataatatttataaggactaaaaacatat |
163 |
Q |
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| T |
42787696 |
aacaaaaagttagtatatttataaggactaaaaacatat |
42787658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 29164646 - 29164610
Alignment:
| Q |
125 |
aacaaaaagttataatatttataaggactaaaaacat |
161 |
Q |
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||||||||||||| |||||||||||||| |||||||| |
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| T |
29164646 |
aacaaaaagttattatatttataaggaccaaaaacat |
29164610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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