View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2867_high_1 (Length: 771)
Name: NF2867_high_1
Description: NF2867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2867_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 651; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 7 - 754
Target Start/End: Original strand, 43867369 - 43868116
Alignment:
| Q |
7 |
gtgagatgaaagcaacctaaggagaggggacctcaaatagcagacattattgaattattatacatgtaacacaacaaatatgtcttactcaaaaatttaa |
106 |
Q |
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| T |
43867369 |
gtgagatgaaagcaacctaaggagaggggacctcaaatagcagacattattgaattattatacatgtaacacaacaaatatgtcttactcaaaaatttaa |
43867468 |
T |
|
| Q |
107 |
tgcacaaaccctaatgggtccataagaaatcctataattaaaaagacaaccaattagaattcagagaataagattaacttcaactctctagccaatcaac |
206 |
Q |
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| T |
43867469 |
tgcacaaaccctaatgggtccataagaaatcctataattaaaaagacaaccaattagaattcagagaataagattaacttcaactctctagccaatcaac |
43867568 |
T |
|
| Q |
207 |
actaagatcataccaattggtgggtcccattaacctccattaatattcctgtagcaaattaccaaaagtgcatgggcagagagaagnnnnnnnn------ |
300 |
Q |
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| T |
43867569 |
actaagatcataccaattggtgggtcccattaacctccattaatattcctgtagcaaattaccaaaagtgcatgggcagagagaaaaaaaaaaaaaaaaa |
43867668 |
T |
|
| Q |
301 |
gtacctactgacactagtgtgtctccttcatcacattgtctagtttcaacaaacacaaaccattaattgaatcannnnnnnnnnnnngacataaaacaat |
400 |
Q |
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| T |
43867669 |
gtacctactgacactagtgtgtctccttcatcacattgtctagtttcaacaaacacaaaccattaattgaatcattttttt------gacataaaacaat |
43867762 |
T |
|
| Q |
401 |
atagtttagttatattctatgattatagacatgaaaggtgatgcagatgcaggtgccttgggagccaagacagcaagagcatgtgatagctgtttaagaa |
500 |
Q |
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| T |
43867763 |
atagtttagttatattctatgattatagacatgaaaggtgatgcagatgcaggtgccttgggagccaagacagcaagagcatgtgatagctgtttaagaa |
43867862 |
T |
|
| Q |
501 |
gaagagcacgttggttttgtgctgcagatgatgctttcctttgtcatggttgtgacaatttggttcactctgcaaatctattagcaagtagacacgaaag |
600 |
Q |
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| T |
43867863 |
gaagagcacgttggttttgtgctgcagatgatgctttcctttgtcatggttgtgacaatttggttcactctgcaaatctattagcaagtagacacgaaag |
43867962 |
T |
|
| Q |
601 |
ggttcgccttcaaaccgcatctgctaaggtaacaacaacagcacaagcatggcacagtggattcacaaggaaagcaagaactccccgccacaacaaaaat |
700 |
Q |
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| T |
43867963 |
ggttcgccttcaaaccgcgtctgctaaggtaacaacaacagcacaagcatggcacagtggattcacaaggaaagcaagaactccccgccacaacaaaaat |
43868062 |
T |
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| Q |
701 |
tcgtcgattcaacaacaacaacaacgtctcaaggaaaaagttctcttcaatact |
754 |
Q |
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| T |
43868063 |
tcgtcgattcaacaacaacagcaacgtctcaaggaaaaagttctcttcaatact |
43868116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 556
Target Start/End: Complemental strand, 50056137 - 50056084
Alignment:
| Q |
503 |
agagcacgttggttttgtgctgcagatgatgctttcctttgtcatggttgtgac |
556 |
Q |
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| T |
50056137 |
agagcacgttggtattgtgctgctgatgatgcttttctctgtcaagcttgtgac |
50056084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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