View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2867_high_4 (Length: 456)
Name: NF2867_high_4
Description: NF2867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2867_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 229 - 447
Target Start/End: Original strand, 28828975 - 28829193
Alignment:
| Q |
229 |
aggaaggcccccaccatacaacgcgtttaataattaataatttggcgaagatttgacaaagatatttttctatttctcttctaatttgttacctcatgac |
328 |
Q |
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| T |
28828975 |
aggaaggcccccaccatacaacgcgtttaataattaataatttggcgaagatttgacaaagatatttttctatttttcttctaatttgttacctcatgac |
28829074 |
T |
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| Q |
329 |
agtgccagcttccacaatcattcttttcccttccaaacacacttgctataaattcctctatttcccaatataactccccaacacaaacctcgttttcgtt |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
28829075 |
agtgccagcttccacaatcattcttttcccttccaaacacacttgctataaattcctctatttcccaatataacttcacaacacaaacctcgttttcgtt |
28829174 |
T |
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| Q |
429 |
ttcacacacggtttcttct |
447 |
Q |
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|||||||| |||||||||| |
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| T |
28829175 |
ttcacacatggtttcttct |
28829193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 29 - 172
Target Start/End: Original strand, 28828775 - 28828918
Alignment:
| Q |
29 |
aatgaaaataatatgcatccaacaacagtccgatgaacaacttaccaacaattacgaggacaatgagtttttgtaggaaaaagtttgacaatccaactag |
128 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28828775 |
aatgaaaaaaatatgcgtccaacaacagtccgatgaacaacttcccaacaattacgaggacaatgagtttttgtaggaaaaagtttgacaatccaactag |
28828874 |
T |
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| Q |
129 |
accaatgtgattttctgatttttaaagatctttccaatactatt |
172 |
Q |
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| T |
28828875 |
accaatgtgattttctgatttttaaagatctttccaatactatt |
28828918 |
T |
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