View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2867_low_13 (Length: 278)
Name: NF2867_low_13
Description: NF2867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2867_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 9333395 - 9333579
Alignment:
| Q |
12 |
agagataaaatgaacaagatagacatagttcactattaaaactgtgaattcgttccataatttaccatgagaaagtaaatcataaaacaactaagatata |
111 |
Q |
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| T |
9333395 |
agagataaaatgaacaagatagacatagttcactattaaaactgtgaattcgttccataatttactatgagaaagtaaatcataaaacaactaagatata |
9333494 |
T |
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| Q |
112 |
tatcaccaccaaaagacctataaacatgtccatcaaaatcatgaagagtgaatgtaagaacctgcactctcacatgagtcaagcc |
196 |
Q |
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| T |
9333495 |
tatcaccaccaaaagacctataaacatgtccatcaaaatcatgaagagtgaatgtaagaacctgcactctcacatgagtcaagcc |
9333579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 9328708 - 9328776
Alignment:
| Q |
193 |
agcctaagctcctcagttgagagaaaactattctctctactgcctaccacaagggttctaacagaatgt |
261 |
Q |
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| T |
9328708 |
agcctaagatcctcttttgagagaaaactattctctctactgcctaccacaagtgttctaacagaatgt |
9328776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 9334007 - 9334054
Alignment:
| Q |
193 |
agcctaagctcctcagttgagagaaaactattctctctactgcctacc |
240 |
Q |
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| T |
9334007 |
agcctaagctcctcagttgagagaaaactattctctctactgcctacc |
9334054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 80 - 195
Target Start/End: Original strand, 18989671 - 18989785
Alignment:
| Q |
80 |
gagaaagtaaatcataaaacaactaagatatatatcaccaccaaaagacctataaacatgtccatcaaaatcatgaagagtgaatgtaagaacctgcact |
179 |
Q |
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| T |
18989671 |
gagaaagtaaatcatacaacagc-aagatatatatcaccagcaaaagatttataaacaagtcaattaaaaccatgaacagtaaagttaagagcctgcact |
18989769 |
T |
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| Q |
180 |
ctcacatgagtcaagc |
195 |
Q |
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| T |
18989770 |
ctcacatgagtcaagc |
18989785 |
T |
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