View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2867_low_19 (Length: 238)
Name: NF2867_low_19
Description: NF2867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2867_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 25817377 - 25817138
Alignment:
| Q |
17 |
agattttaatttgtaaacaactagtttaaaaataacaaatccattttattataagtagatatcataaatctaattccatgggctaccttagtcggtaaag |
116 |
Q |
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| T |
25817377 |
agattttaatttgtaaacaactagtttaaaaataacaaatccattttattataagtagatatcataaatataattccatgggctaccttagtcggtaaag |
25817278 |
T |
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| Q |
117 |
atcaaggaagaagga------------------ctgcagttcctacatttagtttaaatgtgagtaggatagaaaaaatgtaacctttgaggttgataag |
198 |
Q |
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| T |
25817277 |
atcaaggaagaaagatgacaggattccccgcagttgcagttcctacatttagtttaaatgtgagtaggagagaaaaaatgtaacctttgaggttgatgag |
25817178 |
T |
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| Q |
199 |
ggtaatgagcgacttctgatcattttcaggcgaaccgaat |
238 |
Q |
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| T |
25817177 |
ggtaatgagcgacttctgattattttcaggcgaaccgaat |
25817138 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 12010464 - 12010497
Alignment:
| Q |
131 |
actgcagttcctacatttagtttaaatgtgagta |
164 |
Q |
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| T |
12010464 |
actgcagttcctacatttagttcaaatgtgagta |
12010497 |
T |
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