View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2867_low_2 (Length: 623)
Name: NF2867_low_2
Description: NF2867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2867_low_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 613
Target Start/End: Original strand, 42232058 - 42232675
Alignment:
| Q |
1 |
atggaatgttgaatggtgatgatgaatctggtgtaattgtagatcgacctcaaccgatgaagtttacgagtaac----------------ttgttgctga |
84 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||| || ||||| |||| |
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| T |
42232058 |
atggaatgttgaatggtgattatgaatctggtggaattgtagatcgacctcaaccgatgaaggttacgaggaatacgcggagcaggaacgttgtttctga |
42232157 |
T |
|
| Q |
85 |
ttctactcatgtgaatttggatgctgc-gtagaatctaagaatgtgagggtgacgaggaattcgaagaattagaagaatgcagttgaaatttgtgataac |
183 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| |
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|
| T |
42232158 |
ttctactcatgtgtatttggatgctgctgtagaatctaagaatgtgagggtgtcgaggaattcgaagaataagaagaatgcagttgagatttgtgataat |
42232257 |
T |
|
| Q |
184 |
agggatatggagggtgttaaggaagtgaagaagaatgcgagggtgacaaggaattcgaagaacaagaagaatacggttgaggtttgtgattcgagtaatg |
283 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
42232258 |
ggggatatggagggtgtggaagaagtgaagaagaatgtgagggtgacaaggaattcgaagaacaagaagaatacagttgaggtttgtgattcgagtaatg |
42232357 |
T |
|
| Q |
284 |
gggatttggagggtgtcaaagagaaggtggaggaagtgaagaagaatgtgagggtggcaaggaatttgaggaataagataaataaaatgggggtttctga |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| |
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|
| T |
42232358 |
gggatttggagggtgtcaaagagaaggtggaggaagtgaagaagaatgtgagggtgacaaggaatttgaggaataagatgaataaaatggggacttctga |
42232457 |
T |
|
| Q |
384 |
attgagtgttggggatttggttggtgtgaaagagaaggtggaggagccgaggagtgtgaggatgacaaggaatgtgaagaataaaggggttgtaattggg |
483 |
Q |
| |
|
|||||||||||||||||| | |||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| |
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|
| T |
42232458 |
attgagtgttggggatttcgatggtgtga------------aggagccgaggaatgtgaggatgacaaggaacatgaagaataaaggggttgtgattggg |
42232545 |
T |
|
| Q |
484 |
gaagatttgagcttggtggatggagtggagaatgttgagaaaaagaaaacgaggggttgtgctaaggggaagaggaagttgcgggaagagattgttggtg |
583 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
42232546 |
gaagatttgagcttgggggatggagtggagaatgttgagaataagaaaacgaggggtggtgctaaggggaagaggaaattgcgggaagagattgttggtg |
42232645 |
T |
|
| Q |
584 |
atggaggtggtaaagagaattgtgatgatg |
613 |
Q |
| |
|
|||||| |||||||||||||||| |||||| |
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|
| T |
42232646 |
atggagatggtaaagagaattgtcatgatg |
42232675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 567 - 610
Target Start/End: Original strand, 42232890 - 42232933
Alignment:
| Q |
567 |
ggaagagattgttggtgatggaggtggtaaagagaattgtgatg |
610 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
42232890 |
ggaagagtgtgttggtgatggagatggtaaagagaattgtgatg |
42232933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 205 - 613
Target Start/End: Complemental strand, 28946384 - 28945976
Alignment:
| Q |
205 |
gaagtgaagaagaatgcgagggtgacaaggaattcgaagaacaagaagaatacggttgaggtttgtgattcgagtaatggggatttggagggtgtcaaag |
304 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||| || | | |||||||||| |||||||| |||||||||||||| || | |
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|
| T |
28946384 |
gaagtgaagaagaatgtgagggtgacaaggaattcgaagaataagaagaatgtggctaaaatttgtgattcaagtaatggagatttggagggtgtgaagg |
28946285 |
T |
|
| Q |
305 |
agaaggtggaggaagtgaagaagaatgtgagggtggcaaggaatttgaggaataagataaataaaatgggggtttctgaattgagtgttggggatttggt |
404 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28946284 |
agaaggtggaggaagtaaagaaaaatgtgagggtgacaaggaatttgaggaataagataaataaaatgggggtttctgaattgagtgttggggatttgga |
28946185 |
T |
|
| Q |
405 |
tggtgtgaaagagaaggtggaggagccgaggagtgtgaggatgacaaggaatgtgaagaataaaggggttgtaattggggaagatttgagcttggtggat |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28946184 |
tggtgtgaaagagaaggtggaggagccgaggagtgtgaggatgacaaggaatgtgaagaataaaggggttgtaattggggaagatttgagcttggtggat |
28946085 |
T |
|
| Q |
505 |
ggagtggagaatgttgagaaaaagaaaacgaggggttgtgctaaggggaagaggaagttgcgggaagagattgttggtgatggaggtggtaaagagaatt |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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|
| T |
28946084 |
ggagtggagaatgttgagaaaaagaaaacgaggggttgtgctaaggggaagaggaagttgcgggaagaaattgttggtgatggagatggtaaagagaatt |
28945985 |
T |
|
| Q |
605 |
gtgatgatg |
613 |
Q |
| |
|
||||||||| |
|
|
| T |
28945984 |
gtgatgatg |
28945976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 213 - 361
Target Start/End: Complemental strand, 28946487 - 28946339
Alignment:
| Q |
213 |
gaagaatgcgagggtgacaaggaattcgaagaacaagaagaatacggttgaggtttgtgattcgagtaatggggatttggagggtgtcaaagagaaggtg |
312 |
Q |
| |
|
||||||||| |||| || |||||||||||||| ||||||||| | |||||| |||||||||| |||||||| ||||||| | ||| || ||||| || |
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|
| T |
28946487 |
gaagaatgctagggccacgaggaattcgaagaataagaagaatgctgttgagatttgtgattccagtaatggtaatttggatgatgtgaaggagaaagta |
28946388 |
T |
|
| Q |
313 |
gaggaagtgaagaagaatgtgagggtggcaaggaatttgaggaataaga |
361 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||| || |||||||| |
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|
| T |
28946387 |
gaagaagtgaagaagaatgtgagggtgacaaggaattcgaagaataaga |
28946339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 75 - 180
Target Start/End: Complemental strand, 28946530 - 28946427
Alignment:
| Q |
75 |
ttgttgctgattctactcatgtgaatttggatgctgcgtagaatctaagaatgtgagggtgacgaggaattcgaagaattagaagaatgcagttgaaatt |
174 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| ||| ||||| | ||||||| |||| |||||||||||||||||| |||||||||| ||||| ||| |
|
|
| T |
28946530 |
ttgttactgattctactaatgtgaatttggatcctg--tagaaccgaagaatgctagggccacgaggaattcgaagaataagaagaatgctgttgagatt |
28946433 |
T |
|
| Q |
175 |
tgtgat |
180 |
Q |
| |
|
|||||| |
|
|
| T |
28946432 |
tgtgat |
28946427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 28946375 - 28946316
Alignment:
| Q |
121 |
aagaatgtgagggtgacgaggaattcgaagaattagaagaatgcagttgaaatttgtgat |
180 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||| | | ||||||||||| |
|
|
| T |
28946375 |
aagaatgtgagggtgacaaggaattcgaagaataagaagaatgtggctaaaatttgtgat |
28946316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 205 - 613
Target Start/End: Complemental strand, 34823747 - 34823339
Alignment:
| Q |
205 |
gaagtgaagaagaatgcgagggtgacaaggaattcgaagaacaagaagaatacggttgaggtttgtgattcgagtaatggggatttggagggtgtcaaag |
304 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||| || | | |||||||||| |||||||| |||||||||||||| || | |
|
|
| T |
34823747 |
gaagtgaagaagaatgtgagggtgacaaggaattcgaagaataagaagaatgtggctaaaatttgtgattcaagtaatggagatttggagggtgtaaagg |
34823648 |
T |
|
| Q |
305 |
agaaggtggaggaagtgaagaagaatgtgagggtggcaaggaatttgaggaataagataaataaaatgggggtttctgaattgagtgttggggatttggt |
404 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34823647 |
agaaggtggaggaagtaaagaaaaatgtgagggtgacaaggaatttgaggaataagataaataaaatgggggtttctgaattgagtattggggatttgga |
34823548 |
T |
|
| Q |
405 |
tggtgtgaaagagaaggtggaggagccgaggagtgtgaggatgacaaggaatgtgaagaataaaggggttgtaattggggaagatttgagcttggtggat |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34823547 |
tggtgtgaaagagaaggtggaggagccgaggagtgtgaggatgacaaggaatgtgaagaataaaggggttgtaattggggaagatttgagcttggtggat |
34823448 |
T |
|
| Q |
505 |
ggagtggagaatgttgagaaaaagaaaacgaggggttgtgctaaggggaagaggaagttgcgggaagagattgttggtgatggaggtggtaaagagaatt |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
34823447 |
ggagtggagaatgttgagaaaaagaaaacgaggggttgtgctaaggggaagaggaagttgcgggaagaaattgttggtgatggagatggtaaagagaatt |
34823348 |
T |
|
| Q |
605 |
gtgatgatg |
613 |
Q |
| |
|
||||||||| |
|
|
| T |
34823347 |
gtgatgatg |
34823339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 213 - 361
Target Start/End: Complemental strand, 34823850 - 34823702
Alignment:
| Q |
213 |
gaagaatgcgagggtgacaaggaattcgaagaacaagaagaatacggttgaggtttgtgattcgagtaatggggatttggagggtgtcaaagagaaggtg |
312 |
Q |
| |
|
||||||||| |||| || |||||||||||||| ||||||||| | |||||| |||||||||| |||||||| ||||||| | ||| || ||||| || |
|
|
| T |
34823850 |
gaagaatgcaagggccacgaggaattcgaagaataagaagaatgctgttgagatttgtgattccagtaatggtaatttggatgatgtgaaggagaaagta |
34823751 |
T |
|
| Q |
313 |
gaggaagtgaagaagaatgtgagggtggcaaggaatttgaggaataaga |
361 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||| || |||||||| |
|
|
| T |
34823750 |
gaagaagtgaagaagaatgtgagggtgacaaggaattcgaagaataaga |
34823702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 75 - 180
Target Start/End: Complemental strand, 34823893 - 34823790
Alignment:
| Q |
75 |
ttgttgctgattctactcatgtgaatttggatgctgcgtagaatctaagaatgtgagggtgacgaggaattcgaagaattagaagaatgcagttgaaatt |
174 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| ||| ||||| | ||||||| |||| |||||||||||||||||| |||||||||| ||||| ||| |
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|
| T |
34823893 |
ttgttactgattctactaatgtgaatttggatactg--tagaaccgaagaatgcaagggccacgaggaattcgaagaataagaagaatgctgttgagatt |
34823796 |
T |
|
| Q |
175 |
tgtgat |
180 |
Q |
| |
|
|||||| |
|
|
| T |
34823795 |
tgtgat |
34823790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 203 - 317
Target Start/End: Complemental strand, 34823638 - 34823524
Alignment:
| Q |
203 |
aggaagtgaagaagaatgcgagggtgacaaggaattcgaagaacaagaagaatacggttgaggtttgtgattcgagtaatggggatttggagggtgtcaa |
302 |
Q |
| |
|
||||||| ||||| |||| ||||||||||||||||| || ||| |||| |||| | | ||||| ||| | ||||| |||||||||||| ||||| || |
|
|
| T |
34823638 |
aggaagtaaagaaaaatgtgagggtgacaaggaatttgaggaataagataaataaaatgggggtttctgaattgagtattggggatttggatggtgtgaa |
34823539 |
T |
|
| Q |
303 |
agagaaggtggagga |
317 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
34823538 |
agagaaggtggagga |
34823524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 34823738 - 34823679
Alignment:
| Q |
121 |
aagaatgtgagggtgacgaggaattcgaagaattagaagaatgcagttgaaatttgtgat |
180 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||| | | ||||||||||| |
|
|
| T |
34823738 |
aagaatgtgagggtgacaaggaattcgaagaataagaagaatgtggctaaaatttgtgat |
34823679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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