View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2867_low_3 (Length: 477)
Name: NF2867_low_3
Description: NF2867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2867_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 11 - 458
Target Start/End: Original strand, 28946594 - 28947041
Alignment:
| Q |
11 |
catcatcaccattcaacattccatcttcatcaatactctgtaccggaaccctaaatttaacacttttaccactattcccttttttacccttcattggttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28946594 |
catcatcaccattcaacattccatcttcatcaatactctgtaccggaaccctaaatttaacacttttaccactattcccttttttacccttcattggttt |
28946693 |
T |
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| Q |
111 |
atcttctaccatggtttccgtaagtttactttggggattgatgaaattgacaaggatggaagtaacttcaccgatcttaatggtggaaccatcgctgaga |
210 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28946694 |
atcttctaccatggtttccgtaggtttactttggggattgatgaaattgacaaggatggaagtaacttcaccgatcttaatggtggaaccatcgcagaga |
28946793 |
T |
|
| Q |
211 |
tgaaaaggagtaatcggaggaacaggttcgttgtccaaaacggtgccgttagaggaatcgagatctgtgagaatccaattaccggaatcgaaatggatag |
310 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28946794 |
tgaaaaggagtattcggaggaacaggttcgttgtccaaaacggtgccgttagaggaatcgagatctgtgagaatccaattaccggaatcgaaatggatag |
28946893 |
T |
|
| Q |
311 |
tgaggtgtttggtggaaatacctggatctttgatggggaggttgttgccgcggatgacacgaccgattttgacggtggatccaggttcgaattggtgggt |
410 |
Q |
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| T |
28946894 |
tgaggtgtttggtggaaatacctggatctttgatggggaggttgttgccgcggatgacacgaccgattttgacggtggatccaggttcgaattggtgggt |
28946993 |
T |
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| Q |
411 |
ttctccgttgcgtggaccggcgaggatttggagtgtgagagtgggtgg |
458 |
Q |
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| T |
28946994 |
ttctccgttgcgtggaccggcgaggatttggagtgtgagagtgggtgg |
28947041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 11 - 457
Target Start/End: Original strand, 34823957 - 34824403
Alignment:
| Q |
11 |
catcatcaccattcaacattccatcttcatcaatactctgtaccggaaccctaaatttaacacttttaccactattcccttttttacccttcattggttt |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34823957 |
catcatcaccattcaacattccatcttcatcaatactctgtaccggaaccctaaatttaacacttttaccactattcccttttttacccttcattggttt |
34824056 |
T |
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| Q |
111 |
atcttctaccatggtttccgtaagtttactttggggattgatgaaattgacaaggatggaagtaacttcaccgatcttaatggtggaaccatcgctgaga |
210 |
Q |
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| T |
34824057 |
atcttctaccatggtttccgtaggtttactttggggattgatgaaattgacaaggatggaagtaacttcaccgatcttaatggtggaaccatcgctgaga |
34824156 |
T |
|
| Q |
211 |
tgaaaaggagtaatcggaggaacaggttcgttgtccaaaacggtgccgttagaggaatcgagatctgtgagaatccaattaccggaatcgaaatggatag |
310 |
Q |
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| T |
34824157 |
tgaaaaggagtatttggaggaacaggttcgttgtccaaaacggtgccgttagaggaatcgagatctgtgagaatccaattaccggaatcgaaatggatag |
34824256 |
T |
|
| Q |
311 |
tgaggtgtttggtggaaatacctggatctttgatggggaggttgttgccgcggatgacacgaccgattttgacggtggatccaggttcgaattggtgggt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34824257 |
tgaggtgtttggtggaaatacctggatctttgatggggaggttgttgccgcggatgacacgaccgattttgacggtggatccaggttcgaattggtgggt |
34824356 |
T |
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| Q |
411 |
ttctccgttgcgtggaccggcgaggatttggagtgtgagagtgggtg |
457 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34824357 |
ttctccgttgcgtggaccggcgaggatttggagtgtaagagtgggtg |
34824403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 34826476 - 34826533
Alignment:
| Q |
175 |
acttcaccgatcttaatggtggaaccatcgctgagatgaaaaggagtaatcggaggaa |
232 |
Q |
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| T |
34826476 |
acttcaccgatcttaatggtggatccatcacggagataaaaagaagtatttggaggaa |
34826533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 148 - 422
Target Start/End: Complemental strand, 42232033 - 42231756
Alignment:
| Q |
148 |
ttgatgaaattgacaaggatggaagtaacttcaccgatcttaatggtggaaccatcgctgagatgaaaaggagtaatcggaggaacaggttcgttgtcca |
247 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||| ||| | ||||||||||||| ||| | |||||||| |||| ||| || | |
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| T |
42232033 |
ttgatgaaattgactcggatggaagtgacttcaccgatcttaatggtggaagcataggtgagatgaaaaggggtatttggaggaacgggtttgttatcta |
42231934 |
T |
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| Q |
248 |
aaacggtgccgttagaggaatcgagatctgtgagaatccaattaccgga---atcgaaatggatagtgaggtgtttggtggaaatacctggatctttgat |
344 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42231933 |
aaacggtgccgtttgaggaatcgagatatgtgagaatccaattacaggacgaatcgaaatggatagtgaggtgtttggtggaaatacctggatctttgat |
42231834 |
T |
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| Q |
345 |
ggggaggttgttgccgcggatgacacgaccgattttgacggtggatccaggttcgaattggtgggtttctccgttgcg |
422 |
Q |
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|||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
42231833 |
ggggaggttgttgccgcgtatgacccgaccgattttgatggtggatccaggttcgaattggtgggtttcgccgttgcg |
42231756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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