View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2867_low_5 (Length: 403)

Name: NF2867_low_5
Description: NF2867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2867_low_5
NF2867_low_5
[»] chr4 (10 HSPs)
chr4 (1-254)||(21261019-21261267)
chr4 (76-187)||(50859412-50859523)
chr4 (109-254)||(35292685-35292835)
chr4 (76-206)||(35033173-35033303)
chr4 (76-204)||(13779943-13780071)
chr4 (76-186)||(31229011-31229121)
chr4 (76-195)||(48085221-48085339)
chr4 (76-206)||(41222943-41223073)
chr4 (315-403)||(34824363-34824449)
chr4 (76-168)||(25054775-25054867)
[»] chr3 (14 HSPs)
chr3 (45-254)||(42028570-42028774)
chr3 (76-254)||(39439206-39439389)
chr3 (56-263)||(25046051-25046263)
chr3 (56-208)||(32279037-32279189)
chr3 (74-157)||(24373430-24373513)
chr3 (315-359)||(42231693-42231737)
chr3 (114-204)||(44714059-44714149)
chr3 (120-185)||(23420500-23420565)
chr3 (80-134)||(2144593-2144647)
chr3 (131-185)||(2275577-2275631)
chr3 (155-201)||(14568546-14568592)
chr3 (76-125)||(35231288-35231337)
chr3 (182-254)||(24372963-24373035)
chr3 (131-167)||(42958275-42958311)
[»] chr2 (8 HSPs)
chr2 (45-206)||(28219664-28219825)
chr2 (112-255)||(10354894-10355042)
chr2 (56-206)||(28198514-28198664)
chr2 (80-184)||(23701651-23701755)
chr2 (60-192)||(17998987-17999119)
chr2 (106-173)||(44247062-44247129)
chr2 (80-134)||(12432857-12432911)
chr2 (76-173)||(22017713-22017810)
[»] chr5 (11 HSPs)
chr5 (45-254)||(4944410-4944613)
chr5 (109-262)||(11617875-11618033)
chr5 (56-197)||(30085579-30085720)
chr5 (83-201)||(21521454-21521572)
chr5 (83-201)||(21532020-21532138)
chr5 (76-208)||(7505285-7505417)
chr5 (74-169)||(21018128-21018223)
chr5 (109-206)||(15024025-15024122)
chr5 (76-134)||(16596790-16596848)
chr5 (155-196)||(32233763-32233804)
chr5 (109-201)||(41484289-41484381)
[»] chr1 (16 HSPs)
chr1 (57-201)||(8099668-8099811)
chr1 (76-201)||(48046999-48047124)
chr1 (111-191)||(8102100-8102180)
chr1 (109-181)||(34970846-34970918)
chr1 (79-187)||(49765566-49765674)
chr1 (101-206)||(15582289-15582394)
chr1 (120-202)||(8103588-8103670)
chr1 (60-182)||(41419075-41419198)
chr1 (111-198)||(41404868-41404955)
chr1 (76-206)||(32573705-32573835)
chr1 (99-259)||(50677402-50677557)
chr1 (74-173)||(7521720-7521819)
chr1 (76-125)||(35306272-35306321)
chr1 (155-196)||(42116481-42116522)
chr1 (155-196)||(49742069-49742110)
chr1 (130-174)||(50138450-50138494)
[»] scaffold0022 (2 HSPs)
scaffold0022 (74-173)||(43496-43595)
scaffold0022 (74-173)||(77216-77315)
[»] scaffold0039 (1 HSPs)
scaffold0039 (74-208)||(57634-57768)
[»] chr8 (5 HSPs)
chr8 (76-208)||(34924018-34924150)
chr8 (79-181)||(38680487-38680589)
chr8 (336-403)||(28947000-28947067)
chr8 (101-208)||(29844963-29845070)
chr8 (155-196)||(11355524-11355565)
[»] chr7 (7 HSPs)
chr7 (56-205)||(19626094-19626243)
chr7 (113-206)||(36656799-36656892)
chr7 (74-206)||(19848438-19848565)
chr7 (76-254)||(12634070-12634247)
chr7 (111-206)||(3215179-3215274)
chr7 (80-134)||(28300772-28300826)
chr7 (74-122)||(5350354-5350402)
[»] scaffold0110 (1 HSPs)
scaffold0110 (74-201)||(37864-37990)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 8e-77; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 21261267 - 21261019
Alignment:
Q  1 caaattatgcagaaccaaaatttaagctgcttatgtttattcttgtgaagttttctaagtaaaggataaataagaaataaaaaagttataactaatttca 100  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||    
T  21261267 caaattatgcagaaccaaaatttatgttgcttatgtttattcttgtgaagttttctaagtaaagggtaaataaggaataaaaaagttataactaattcca 21261168  T
Q  101 ttccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaaatttttgttccactccattccattc 200  Q
    |||| |  ||||||||||||||||||| | |||||||| |||||||||| ||||||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  21261167 ttccgttcactttccaaacaatggagtagaaaattagtctcattccgtcatataatatcaaaacaatggaatggaatctttgttccactccattccattc 21261068  T
Q  201 cattccatgctgcttcattctgttccgctcctttagttttagattatccaaaca 254  Q
    ||| ||     ||| ||||| | |||||| | |||||||||| |||||||||||    
T  21261067 catccc-----gctccattccgctccgcttcgttagttttaggttatccaaaca 21261019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 76 - 187
Target Start/End: Original strand, 50859412 - 50859523
Alignment:
Q  76 aataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaa 175  Q
    |||||||||||||||||| ||| |||||| || |||||||||| ||||||||||||||||||||||||||||||  | |||||||||||||||||||| |    
T  50859412 aataaaaaagttataactcattccattccgtccactttccaaataatggagtgggaaattagtttcattccgtcaaaaaatatccaaacaatggaatgta 50859511  T
Q  176 atttttgttcca 187  Q
    || ||| |||||    
T  50859512 atctttattcca 50859523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 109 - 254
Target Start/End: Original strand, 35292685 - 35292835
Alignment:
Q  109 actttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaaatttttgttcca-----ctccattccattccat 203  Q
    ||||||||||||||||||||||||||||||| ||||||||| |  ||||||||||||||| |||||||||||| |||||      |||||||| | || |    
T  35292685 actttccaaacaatggagtgggaaattagttccattccgtcttgaaatatccaaacaatgtaatgaaatttttattccatgccgttccattccgtcccgt 35292784  T
Q  204 tccatgctgcttcattctgttccgctcctttagttttagattatccaaaca 254  Q
     |||| |  || ||||| |||||||||| ||||||||||||||||||||||    
T  35292785 cccattccactccattccgttccgctccgttagttttagattatccaaaca 35292835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 35033303 - 35033173
Alignment:
Q  76 aataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaa 175  Q
    ||||||||| |||||| | ||| | ||||||  ||||||||||||||||||||| ||||||||| |||||||| ||| |||||||||||||| | ||| |    
T  35033303 aataaaaaaattataaatcattccgttccattcactttccaaacaatggagtggaaaattagttccattccgtagtaaaatatccaaacaataggatgga 35033204  T
Q  176 atttttgttccactccattccattccattcc 206  Q
    |  |||||||| |||| |||||| |||||||    
T  35033203 acctttgttccgctccgttccatcccattcc 35033173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 76 - 204
Target Start/End: Original strand, 13779943 - 13780071
Alignment:
Q  76 aataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaa 175  Q
    ||||||||| |||||| | ||| | ||||||  ||||||||||||||||||||| ||||||||| |||||||| ||| |||||||||||||| | ||| |    
T  13779943 aataaaaaaattataaatcattccgttccattcactttccaaacaatggagtggaaaattagttccattccgtagtaaaatatccaaacaataggatgga 13780042  T
Q  176 atttttgttccactccattccattccatt 204  Q
    |  ||| |||| ||| |||||||||||||    
T  13780043 acctttattccgctcgattccattccatt 13780071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 31229011 - 31229121
Alignment:
Q  76 aataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaa 175  Q
    |||||||| ||||||||| ||| | |||| |||||||||||||||||||| || |||||| |||||||||  || || |||||||||||| |||||||||    
T  31229011 aataaaaatgttataactcattccgttccgtcaactttccaaacaatggattgtgaaatttgtttcattctctcataaaatatccaaacagtggaatgaa 31229110  T
Q  176 atttttgttcc 186  Q
    || ||| ||||    
T  31229111 atatttattcc 31229121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 76 - 195
Target Start/End: Original strand, 48085221 - 48085339
Alignment:
Q  76 aataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaa 175  Q
    |||||||||||||||| ||||| | |||| || | ||| ||||||| ||| ||| ||||||| |||||||| ||||| |||||||||||||||||||| |    
T  48085221 aataaaaaagttataattaattccgttccgtcgatttttcaaacaaaggaatggaaaattagcttcattccatcgta-aatatccaaacaatggaatgta 48085319  T
Q  176 atttttgttccactccattc 195  Q
    |||||| ||||  |||||||    
T  48085320 atttttattccgttccattc 48085339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 41223073 - 41222943
Alignment:
Q  76 aataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaa 175  Q
    ||||||||||||||||||  || | |||| | |||||||||||||||||| ||| ||| ||||| | |||| || || | |||||||||||||||||| |    
T  41223073 aataaaaaagttataactcgttccgttccgttaactttccaaacaatggaatggaaaactagttccgttccatcataaagtatccaaacaatggaatgga 41222974  T
Q  176 atttttgttccactccattccattccattcc 206  Q
    || ||| ||||| ||| |||| |||||||||    
T  41222973 atctttattccattccgttccgttccattcc 41222943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 403
Target Start/End: Complemental strand, 34824449 - 34824363
Alignment:
Q  315 tccaaactcactctctcactatcactaaaatggaagaacaacaagaggctccatctctcacacttcaaatcctcgccggtccacgcaac 403  Q
    ||||||||||||| ||| ||  ||||||||||||||||||||||||  | ||  |||| ||||| ||||||||||||||||||||||||    
T  34824449 tccaaactcactcactctct--cactaaaatggaagaacaacaagactcacccactcttacactccaaatcctcgccggtccacgcaac 34824363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 168
Target Start/End: Original strand, 25054775 - 25054867
Alignment:
Q  76 aataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatg 168  Q
    |||||||||||||||| | |||  ||||| |||||||| |||| |||||||||| ||||| ||| |||||| ||||| |||| ||||||||||    
T  25054775 aataaaaaagttataatttattctattccgtcaacttttcaaaaaatggagtggtaaatttgttccattccatcgtaaaatacccaaacaatg 25054867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 45 - 254
Target Start/End: Complemental strand, 42028774 - 42028570
Alignment:
Q  45 gtgaagttttctaagtaaaggataaataagaaataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcatt 144  Q
    ||||| ||||||||| ||||| |||| | | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||    
T  42028774 gtgaaattttctaagaaaagggtaaaaatggaataaaaaagttataactaatttcattccgtccactttccaaacaatggagtgggaaattagttccatt 42028675  T
Q  145 ccgtcgtataatatccaaacaatggaatgaaatttttgttccactccattccattccattccatgctgcttcattctgttccgctcctttagttttagat 244  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     ||| ||||| |||||||||| |||||||||| |    
T  42028674 ccgccgtataatatccaaacaatggaatgaaatctttgttccactccattccattccattcc-----gctccattcggttccgctccgttagttttaggt 42028580  T
Q  245 tatccaaaca 254  Q
    ||||||||||    
T  42028579 tatccaaaca 42028570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 76 - 254
Target Start/End: Complemental strand, 39439389 - 39439206
Alignment:
Q  76 aataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaa 175  Q
    |||||||||||||||||   || | |||| |  ||||| ||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  39439389 aataaaaaagttataacatgttccgttccgttcacttttcaaacaatggagtgggaaattagtttcattccgtcttgaaatatccaaacaatggaatgaa 39439290  T
Q  176 atttttgttcca-----ctccattccattccattccatgctgcttcattctgttccgctcctttagttttagattatccaaaca 254  Q
    |||||| |||||      ||||||| || || | |||| | ||| |||||  ||||||||| ||||||||||||||||||||||    
T  39439289 atttttattccatgtcgttccattctatcccgtcccattccgctccattccattccgctccgttagttttagattatccaaaca 39439206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 56 - 263
Target Start/End: Original strand, 25046051 - 25046263
Alignment:
Q  56 taagtaaaggataaataagaaataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataa 155  Q
    |||||||||| |||| | | |||||||||||||||| | ||| | ||||||  |||||| |||||||||||||| |||||||||  ||||||| ||| ||    
T  25046051 taagtaaagggtaaaaatggaataaaaaagttataaatcattccgttccattcactttctaaacaatggagtggaaaattagttcaattccgtagtaaaa 25046150  T
Q  156 tatccaaacaatggaatgaaatttttgttccactccattccattcca-----ttccatgctgcttcattctgttccgctcctttagttttagattatcca 250  Q
    |||||||||||| | ||| ||  |||||||| |||| ||||||||||     |||||  | ||| |||||||||||||||| ||||||| |  |||||||    
T  25046151 tatccaaacaataggatggaacctttgttccgctccgttccattccattcagttccactccgctccattctgttccgctccgttagtttcatgttatcca 25046250  T
Q  251 aacaaagtcttaa 263  Q
    |||| || |||||    
T  25046251 aacagagccttaa 25046263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 56 - 208
Target Start/End: Original strand, 32279037 - 32279189
Alignment:
Q  56 taagtaaaggataaataagaaataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataa 155  Q
    |||||||||| |||| | | ||| |||||||||||| | ||| | ||||||  ||||||||||||||||||||| |||||||||  ||||||| ||| ||    
T  32279037 taagtaaagggtaaaaatggaatgaaaaagttataaatcattccgttccattcactttccaaacaatggagtggaaaattagttcaattccgtagtaaaa 32279136  T
Q  156 tatccaaacaatggaatgaaatttttgttccactccattccattccattccat 208  Q
    |||||||||||| | ||| ||  |||||||| |||| ||||||||||||||||    
T  32279137 tatccaaacaataggatggaacctttgttccgctccgttccattccattccat 32279189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 24373513 - 24373430
Alignment:
Q  74 gaaataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataata 157  Q
    |||||||||||||||||| |  ||   ||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  24373513 gaaataaaaaagttataatttgttctgttccatccactttccaaacaatggaatgggaaattagtttcattccgtcgtaaaata 24373430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 42231693 - 42231737
Alignment:
Q  315 tccaaactcactctctcactatcactaaaatggaagaacaacaag 359  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  42231693 tccaaactcactctctcactatcagtaaaatggaagaacaacaag 42231737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 204
Target Start/End: Original strand, 44714059 - 44714149
Alignment:
Q  114 ccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaaatttttgttccactccattccattccatt 204  Q
    ||||||||| || ||  ||||||||| |||||| ||||| |||||||||||||| ||||||||| ||| ||||| |||  |||||||||||    
T  44714059 ccaaacaatagaatgaaaaattagttccattccatcgtaaaatatccaaacaattgaatgaaatctttattccattccgctccattccatt 44714149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 23420500 - 23420565
Alignment:
Q  120 aatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaaatttttgttc 185  Q
    |||||| ||| |||||||||||||||| || || ||||||||||||||||||| |||| |||||||    
T  23420500 aatggaatggaaaattagtttcattccatcataaaatatccaaacaatggaataaaatatttgttc 23420565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 2144647 - 2144593
Alignment:
Q  80 aaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaat 134  Q
    |||||||||||| | ||| |||||| |||||||||||||||||||| ||| ||||    
T  2144647 aaaaagttataatttattccattccgtcaactttccaaacaatggaatggaaaat 2144593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 2275577 - 2275631
Alignment:
Q  131 aaattagtttcattccgtcgtataatatccaaacaatggaatgaaatttttgttc 185  Q
    |||||| ||||||||| || || | |||||||||||||||||||||| |||||||    
T  2275577 aaattaatttcattccatcttagagtatccaaacaatggaatgaaatgtttgttc 2275631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 14568546 - 14568592
Alignment:
Q  155 atatccaaacaatggaatgaaatttttgttccactccattccattcc 201  Q
    ||||||||||||||||||  ||| ||||||||| |||||||||||||    
T  14568546 atatccaaacaatggaattgaatctttgttccattccattccattcc 14568592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 35231337 - 35231288
Alignment:
Q  76 aataaaaaagttataactaatttcattccatcaactttccaaacaatgga 125  Q
    ||||||||| |||||||| ||| |||||| |||| |||||||||||||||    
T  35231337 aataaaaaaattataactcattccattccgtcaattttccaaacaatgga 35231288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 24373035 - 24372963
Alignment:
Q  182 gttccactccattccattccattccatgctgcttcattctgttccgctcctttagttttagattatccaaaca 254  Q
    ||||| ||||||||||||||||||||| | ||| |||||  |||| |||| |||||||||  ||||| |||||    
T  24373035 gttccgctccattccattccattccattccgctccattccattccactccgttagttttaagttatcgaaaca 24372963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 42958275 - 42958311
Alignment:
Q  131 aaattagtttcattccgtcgtataatatccaaacaat 167  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  42958275 aaattagtttccttccgtcgtaaaatatccaaacaat 42958311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 45 - 206
Target Start/End: Original strand, 28219664 - 28219825
Alignment:
Q  45 gtgaagttttctaagtaaaggataaataagaaataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcatt 144  Q
    ||||| ||||||||| ||||| |||| | ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||    
T  28219664 gtgaaattttctaaggaaagggtaaaaatgaaataaaaaagttataactaatttcattccgtccactttccaaacaatggagtgggaaattagttccatt 28219763  T
Q  145 ccgtcgtataatatccaaacaatggaatgaaatttttgttccactccattccattccattcc 206  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28219764 ccgccgtataatatccaaacaatggaatgaaatctttgttccactccattccattccattcc 28219825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 112 - 255
Target Start/End: Original strand, 10354894 - 10355042
Alignment:
Q  112 ttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaaatttttgttcca-----ctccattccattccattcc 206  Q
    |||||||||||||||||||||||||||| ||||||||| |  |||||||||||||||||||||||||||| |||||      |||||||| | ||||  |    
T  10354894 ttccaaacaatggagtgggaaattagttccattccgtcttgaaatatccaaacaatggaatgaaatttttattccatgacgttccattccgtcccatctc 10354993  T
Q  207 atgctgcttcattctgttccgctcctttagttttagattatccaaacaa 255  Q
    || |  || ||||| |||||| ||| |||||||||||||||||||||||    
T  10354994 attccactccattccgttccgatccgttagttttagattatccaaacaa 10355042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 56 - 206
Target Start/End: Complemental strand, 28198664 - 28198514
Alignment:
Q  56 taagtaaaggataaataagaaataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataa 155  Q
    |||||||||| |||| | | |||||||||||||||| | ||| | ||||||  ||||||||||||||| ||||| ||||||||| |||||||| ||| ||    
T  28198664 taagtaaagggtaaaaatggaataaaaaagttataaatcattccgttccattcactttccaaacaatgaagtggaaaattagttccattccgtagtaaaa 28198565  T
Q  156 tatccaaacaatggaatgaaatttttgttccactccattccattccattcc 206  Q
    |||||||||||| |  || ||  |||||||| |||| ||||||||||||||    
T  28198564 tatccaaacaatagggtggaacctttgttccgctccgttccattccattcc 28198514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 23701651 - 23701755
Alignment:
Q  80 aaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaaattt 179  Q
    |||||||||||||| ||| |||| |||||||||||||||||||||| ||| |||||||| | |||| ||| || |||||| || |||||||||||||| |    
T  23701651 aaaaagttataactcattccatttcatcaactttccaaacaatggaatggaaaattagtcttattctgtcataaaatatctaagcaatggaatgaaatct 23701750  T
Q  180 ttgtt 184  Q
    |||||    
T  23701751 ttgtt 23701755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 60 - 192
Target Start/End: Complemental strand, 17999119 - 17998987
Alignment:
Q  60 taaaggataaataagaaataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatc 159  Q
    |||||| |||| | |||||||||||||||| ||   |  | |||| || ||||| ||||||||||| ||||||||||||| ||||||||| || ||||||    
T  17999119 taaagggtaaaaatgaaataaaaaagttatgacacttcccgttccgtccacttttcaaacaatggaatgggaaattagttccattccgtcataaaatatc 17999020  T
Q  160 caaacaatggaatgaaatttttgttccactcca 192  Q
    |||||||| ||||| ||||||| ||||| ||||    
T  17999019 caaacaatagaatgtaatttttattccattcca 17998987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 44247062 - 44247129
Alignment:
Q  106 tcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatg 173  Q
    ||||||| |||||||||||||||| || |||||||| |||| ||||  ||||||||||| ||||||||    
T  44247062 tcaacttcccaaacaatggagtggaaagttagtttcgttccatcgtgaaatatccaaacgatggaatg 44247129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 12432911 - 12432857
Alignment:
Q  80 aaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaat 134  Q
    |||||||||||| | ||| |||||| |||||||||||||||||||| ||| ||||    
T  12432911 aaaaagttataatttattccattccgtcaactttccaaacaatggaatggaaaat 12432857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 173
Target Start/End: Complemental strand, 22017810 - 22017713
Alignment:
Q  76 aataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatg 173  Q
    ||||||||| |||||| | ||| | |||| |||| ||||| ||||||||| ||  ||||||||| |||||| | ||| | ||||| ||||||||||||    
T  22017810 aataaaaaaattataattcattccgttccgtcaattttcctaacaatggaatgaaaaattagttgcattccattgtaaagtatccgaacaatggaatg 22017713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 45 - 254
Target Start/End: Original strand, 4944410 - 4944613
Alignment:
Q  45 gtgaagttttctaagtaaaggataaataagaaataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcatt 144  Q
    ||||||||||||||| ||||| |||| | | ||||||||||||||| |||||| |||||| || |||||||||||||||||||  |||||||||| ||||    
T  4944410 gtgaagttttctaagaaaagggtaaaaatggaataaaaaagttatatctaattccattccgtccactttccaaacaatggagtatgaaattagttccatt 4944509  T
Q  145 ccgtcgtataatatccaaacaatggaatgaaatttttgttccactccattccattccattccatgctgcttcattctgttccgctcctttagttttagat 244  Q
     |||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| ||||||  ||    |||||| |||||||||| |||||||||| |    
T  4944510 tcgtcgtataatatccaaacaatggaatggaatctttgttccactccgttccatttcattcc--gc----tcattccgttccgctccgttagttttaggt 4944603  T
Q  245 tatccaaaca 254  Q
    ||||||||||    
T  4944604 tatccaaaca 4944613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 262
Target Start/End: Original strand, 11617875 - 11618033
Alignment:
Q  109 actttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaaatttttgttcca-----ctccattccattccat 203  Q
    ||||||||||||||||||||||||||||||||||||||||| |  ||||| |||||||||||||| ||||||| |||||      |||||||  | || |    
T  11617875 actttccaaacaatggagtgggaaattagtttcattccgtcttgaaatattcaaacaatggaatggaatttttattccatgacgttccattcagtcccgt 11617974  T
Q  204 tccatgctgcttcattctgttccgctcctttagttttagattatccaaacaaagtctta 262  Q
     |||| | ||| ||||||||| |||||| ||||||||||||||||||||||||| ||||    
T  11617975 cccattccgctccattctgtttcgctccgttagttttagattatccaaacaaagcctta 11618033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 56 - 197
Target Start/End: Original strand, 30085579 - 30085720
Alignment:
Q  56 taagtaaaggataaataagaaataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataa 155  Q
    |||||||||| |||| | |||||||||||||||||| | ||| | ||||||  ||||||||||||||||||||| |||||||||  ||||||| ||| ||    
T  30085579 taagtaaagggtaaaaatgaaataaaaaagttataaatcattccgttccattcactttccaaacaatggagtggaaaattagttcaattccgtagtaaaa 30085678  T
Q  156 tatccaaacaatggaatgaaatttttgttccactccattcca 197  Q
    |||||||||||| | ||| ||  |||||||| |||| |||||    
T  30085679 tatccaaacaataggatggaacctttgttccgctccgttcca 30085720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 21521454 - 21521572
Alignment:
Q  83 aagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaaatttttg 182  Q
    ||||||||| | ||| |||||| |  ||||| ||||||||||| |  | |||| ||| |||||| |||||||||||||||||||||||||||||| |||     
T  21521454 aagttataattcattccattccgttcacttttcaaacaatggaataagtaatttgttccattccatcgtataatatccaaacaatggaatgaaatattta 21521553  T
Q  183 ttccactccattccattcc 201  Q
    ||||| ||| |||| ||||    
T  21521554 ttccattccgttccgttcc 21521572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 21532020 - 21532138
Alignment:
Q  83 aagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaaatttttg 182  Q
    ||||||||| | ||| |||||| |  ||||| ||||||||||| |  | |||| ||| |||||| |||||||||||||||||||||||||||||| |||     
T  21532020 aagttataattcattccattccgttcacttttcaaacaatggaataagtaatttgttccattccatcgtataatatccaaacaatggaatgaaatattta 21532119  T
Q  183 ttccactccattccattcc 201  Q
    ||||| ||| |||| ||||    
T  21532120 ttccattccgttccgttcc 21532138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 76 - 208
Target Start/End: Complemental strand, 7505417 - 7505285
Alignment:
Q  76 aataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaa 175  Q
    |||||||||| ||||||| ||| | |||| |||||||| ||||||||||| ||| ||||||| | |||||| || || | |||| ||| ||||||||  |    
T  7505417 aataaaaaagatataactcattccgttccgtcaacttttcaaacaatggaatggaaaattagctccattccatcataaagtatctaaataatggaatata 7505318  T
Q  176 atttttgttccactccattccattccattccat 208  Q
    |||||| |||   ||||||||| ||| ||||||    
T  7505317 atttttattctgttccattccactccgttccat 7505285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 21018128 - 21018223
Alignment:
Q  74 gaaataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatgg 169  Q
    |||||||||||||||||||  || | |||||||| ||||| |||||||| | ||| ||||||||||| |||| | | || ||||| ||||||||||    
T  21018128 gaaataaaaaagttataacacatcttattccatccacttttcaaacaatagggtgagaaattagttttattctgccataaaatattcaaacaatgg 21018223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 206
Target Start/End: Original strand, 15024025 - 15024122
Alignment:
Q  109 actttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaaatttttgttccactccattccattccattcc 206  Q
    |||||| |||||||||| ||  || || ||| |||||||||||| |||| | ||||||| ||||| | ||||||||||| |||  |||||||||||||    
T  15024025 actttctaaacaatggaatgaaaagtttgttccattccgtcgtacaatacctaaacaatagaatgcagtttttgttccattccgctccattccattcc 15024122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 16596848 - 16596790
Alignment:
Q  76 aataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaat 134  Q
    |||||||||||||||||| ||| |||| |||||| ||| ||||||||||| || |||||    
T  16596848 aataaaaaagttataactcattccattacatcaatttttcaaacaatggaatgagaaat 16596790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 32233763 - 32233804
Alignment:
Q  155 atatccaaacaatggaatgaaatttttgttccactccattcc 196  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||    
T  32233763 atatccaaacaatggaatggaatctttgttccattccattcc 32233804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 201
Target Start/End: Original strand, 41484289 - 41484381
Alignment:
Q  109 actttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaaatttttgttccactccattccattcc 201  Q
    |||||| |||||||||| ||   |||| ||| | |||| ||||| ||||||||||||||| |||| |||  ||||||| |||||||| |||||    
T  41484289 actttctaaacaatggaatgaataatttgttccgttccatcgtaaaatatccaaacaatgaaatggaataattgttccgctccattctattcc 41484381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 57 - 201
Target Start/End: Original strand, 8099668 - 8099811
Alignment:
Q  57 aagtaaaggataaataagaaataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataat 156  Q
    ||||||||| |||| | |||| ||| || |||||||| ||||  |||| || | |||| ||||||||||||||||||||||||||||||||| || ||||    
T  8099668 aagtaaagggtaaaaatgaaaaaaacaa-ttataactcattttgttccgtctattttctaaacaatggagtgggaaattagtttcattccgttgtttaat 8099766  T
Q  157 atccaaacaatggaatgaaatttttgttccactccattccattcc 201  Q
    ||||||||||||||||||||| ||||||||||||| |||| ||||    
T  8099767 atccaaacaatggaatgaaatctttgttccactccgttccgttcc 8099811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 76 - 201
Target Start/End: Original strand, 48046999 - 48047124
Alignment:
Q  76 aataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaa 175  Q
    |||||||||||||||||   || | ||||||  ||||||||||||||||||||||||||||||| ||||| ||| || ||| ||||||||||||||||||    
T  48046999 aataaaaaagttataacatgttccgttccattcactttccaaacaatggagtgggaaattagttccattctgtcttaaaatttccaaacaatggaatgaa 48047098  T
Q  176 atttttgttccactccattccattcc 201  Q
    |||||| |||||  || |||||||||    
T  48047099 atttttattccataccgttccattcc 48047124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 8102180 - 8102100
Alignment:
Q  111 tttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaaatttttgttccactcc 191  Q
    |||| ||||||||||||||||||||||||| ||||| |||| |||||| |||||||||||||||||| |||||||||||||    
T  8102180 tttctaaacaatggagtgggaaattagttttattccatcgtttaatattcaaacaatggaatgaaatctttgttccactcc 8102100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 34970846 - 34970918
Alignment:
Q  109 actttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaaattttt 181  Q
    ||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||| ||||||    
T  34970846 actttccaaacaatggagtgggaaattagttccattccgtcataaaatatccaaacaatggaatgacattttt 34970918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 79 - 187
Target Start/End: Original strand, 49765566 - 49765674
Alignment:
Q  79 aaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaaatt 178  Q
    ||||||||||||||   || | |||| || ||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| ||    
T  49765566 aaaaaagttataacactttccgttccgtccacttttcaaacaatggagtgggaaattagtttcattccatcgtaaaatattcaaacaatggaatgaattt 49765665  T
Q  179 tttgttcca 187  Q
    ||| |||||    
T  49765666 ttttttcca 49765674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 15582289 - 15582394
Alignment:
Q  101 ttccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaaatttttgttccactccattccattc 200  Q
    |||| |||||||||||||||||||| ||| ||||||||| |||||| || || | |||||||||||||||||| ||||||| ||||  ||||||||||||    
T  15582289 ttccgtcaactttccaaacaatggaatggaaaattagttccattccatcataaagtatccaaacaatggaatggaatttttattccgttccattccattc 15582388  T
Q  201 cattcc 206  Q
    | ||||    
T  15582389 ccttcc 15582394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 8103670 - 8103588
Alignment:
Q  120 aatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaaatttttgttccactccattccattcca 202  Q
    ||||||||||||||||||||| ||||||| || |||||||||||||||| |||  ||| ||||||||||||| || |||||||    
T  8103670 aatggagtgggaaattagttttattccgttgtttaatatccaaacaatgaaatagaatctttgttccactccgtttcattcca 8103588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 182
Target Start/End: Original strand, 41419075 - 41419198
Alignment:
Q  60 taaaggataaataagaaataaaaaagttataactaatttcattccatcaacttt-ccaaacaatggagtgggaaattagtttcattccgtcgtataatat 158  Q
    |||||| |||||  |||||||||||| ||||||| ||||  ||||||| | ||| ||||| |||| | || |||||||||||||||| |||||| |||||    
T  41419075 taaagggtaaatttgaaataaaaaagatataacttattttgttccatccatttttccaaagaatgtaatgagaaattagtttcattctgtcgtaaaatat 41419174  T
Q  159 ccaaacaatggaatgaaatttttg 182  Q
    | |||||||| ||| |||| ||||    
T  41419175 caaaacaatgaaataaaatctttg 41419198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 41404868 - 41404955
Alignment:
Q  111 tttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaaatttttgttccactccattccat 198  Q
    ||||||||||||||| ||||||||||  |  ||||||||||| | |||||||||| ||||||| ||| ||| ||||  ||||||||||    
T  41404868 tttccaaacaatggaatgggaaattaactagattccgtcgtaaagtatccaaacagtggaatggaatctttattccgttccattccat 41404955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 32573705 - 32573835
Alignment:
Q  76 aataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaa 175  Q
    ||||||||||||||||||  || | |||  | |||||| ||||||||||| ||| ||| |||||   |||| || || | |||||||||||||||||| |    
T  32573705 aataaaaaagttataactcgttccgttctgttaacttttcaaacaatggaatggaaaactagttctgttccatcataaagtatccaaacaatggaatgga 32573804  T
Q  176 atttttgttccactccattccattccattcc 206  Q
    || ||| ||||| |||||||| |||| ||||    
T  32573805 atctttattccattccattccgttccgttcc 32573835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 259
Target Start/End: Complemental strand, 50677557 - 50677402
Alignment:
Q  99 cattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaaatttttgttccactccattccat 198  Q
    |||||| |||||||  |||||||| |||||| || |||||| | |||| ||||| ||||||||||| |||||||| ||| | | ||||| | |||| |||    
T  50677557 cattccgtcaacttctcaaacaatagagtggaaagttagttccgttccatcgtaaaatatccaaacgatggaatgtaatctctattccatttcatttcat 50677458  T
Q  199 tccattccatgctgcttcattctgttccgctcctttagttttagattatccaaacaaagtc 259  Q
    ||   |||||     | |||||| ||||||||| |||||||||  ||||||||||| ||||    
T  50677457 tctgctccat-----tccattcttttccgctccgttagttttaagttatccaaacagagtc 50677402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 173
Target Start/End: Original strand, 7521720 - 7521819
Alignment:
Q  74 gaaataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatg 173  Q
    |||||||| ||||||||||| |||  ||||  || ||||| |||||||| || ||| ||||||| | |||||| || || ||||| ||||||||||||||    
T  7521720 gaaataaataagttataactcattcaattctctcgacttttcaaacaatagaatggaaaattagctccattccatcataaaatattcaaacaatggaatg 7521819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 35306321 - 35306272
Alignment:
Q  76 aataaaaaagttataactaatttcattccatcaactttccaaacaatgga 125  Q
    ||||||||| |||||||| ||| |||||| |||| |||||||||||||||    
T  35306321 aataaaaaaattataactcattccattccgtcaattttccaaacaatgga 35306272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 42116522 - 42116481
Alignment:
Q  155 atatccaaacaatggaatgaaatttttgttccactccattcc 196  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||    
T  42116522 atatccaaacaatggaatggaatctttgttccattccattcc 42116481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 49742069 - 49742110
Alignment:
Q  155 atatccaaacaatggaatgaaatttttgttccactccattcc 196  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||    
T  49742069 atatccaaacaatggaatggaatctttgttccattccattcc 49742110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 50138494 - 50138450
Alignment:
Q  130 gaaattagtttcattccgtcgtataatatccaaacaatggaatga 174  Q
    |||||||||| |||||||||||  |||||||||||| ||||||||    
T  50138494 gaaattagttccattccgtcgttaaatatccaaacagtggaatga 50138450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 74 - 173
Target Start/End: Complemental strand, 43595 - 43496
Alignment:
Q  74 gaaataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatg 173  Q
    |||||||||||||||||||| ||| | |||  || ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||    
T  43595 gaaataaaaaagttataactcattccgttctgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatccaaacaatggaatg 43496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 74 - 173
Target Start/End: Complemental strand, 77315 - 77216
Alignment:
Q  74 gaaataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatg 173  Q
    |||||||||||||||||||| ||| | |||  || ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||    
T  77315 gaaataaaaaagttataactcattccgttctgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatccaaacaatggaatg 77216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 74 - 208
Target Start/End: Original strand, 57634 - 57768
Alignment:
Q  74 gaaataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatg 173  Q
    ||||||||||||||||||||  || | |||| | |||||||||||||||||| ||| ||| ||||| | |||| || || | ||||||||||||||||||    
T  57634 gaaataaaaaagttataactcgttccgttccgttaactttccaaacaatggaatggaaaactagttccgttccatcataaagtatccaaacaatggaatg 57733  T
Q  174 aaatttttgttccactccattccattccattccat 208  Q
    |||| ||| ||||| || ||||| |||||||||||    
T  57734 aaatctttattccattcaattccgttccattccat 57768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 76 - 208
Target Start/End: Complemental strand, 34924150 - 34924018
Alignment:
Q  76 aataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaa 175  Q
    ||||||||||||||||||  || | |||| | |||||||||||||||||| ||| ||| ||||||| |||| || || | ||||||||||||||||||||    
T  34924150 aataaaaaagttataactcgttccgttccgttaactttccaaacaatggaatggaaaactagtttcgttccatcataaagtatccaaacaatggaatgaa 34924051  T
Q  176 atttttgttccactccattccattccattccat 208  Q
    || ||| ||||| || ||||  |||||||||||    
T  34924050 atctttattccattcaattctgttccattccat 34924018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 38680487 - 38680589
Alignment:
Q  79 aaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaaatt 178  Q
    ||||||||||||||   |||| |||| || ||||||||| |||||||||||||||||||||  ||||| ||||| ||||||||||||||| |||||| ||    
T  38680487 aaaaaagttataacacttttcgttccgtccactttccaagcaatggagtgggaaattagttcaattccatcgtaaaatatccaaacaatgaaatgaattt 38680586  T
Q  179 ttt 181  Q
    |||    
T  38680587 ttt 38680589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 336 - 403
Target Start/End: Complemental strand, 28947067 - 28947000
Alignment:
Q  336 tcactaaaatggaagaacaacaagaggctccatctctcacacttcaaatcctcgccggtccacgcaac 403  Q
    |||||||||||||||||||||||||  | ||  |||||||||| ||||||||||||||||||||||||    
T  28947067 tcactaaaatggaagaacaacaagacccacccactctcacactccaaatcctcgccggtccacgcaac 28947000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 29844963 - 29845070
Alignment:
Q  101 ttccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaaatttttgttccactccattccattc 200  Q
    ||||||| ||||  ||||||||||| ||||||||||||| ||||||||| |  |||||||||||| |||||||| || ||| ||||  |||||||| |||    
T  29844963 ttccatcgacttctcaaacaatggaatgggaaattagttccattccgtcattaaatatccaaacagtggaatgatatctttattccgttccattccgttc 29845062  T
Q  201 cattccat 208  Q
    | ||||||    
T  29845063 cgttccat 29845070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 11355524 - 11355565
Alignment:
Q  155 atatccaaacaatggaatgaaatttttgttccactccattcc 196  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||    
T  11355524 atatccaaacaatggaatggaatctttgttccattccattcc 11355565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 205
Target Start/End: Original strand, 19626094 - 19626243
Alignment:
Q  56 taagtaaaggataaataagaaataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataa 155  Q
    |||||||||| |||| | | ||||||||| |||||| | ||| | ||||||  |||||||||||||| |||||| ||||||||| |||||||| ||| ||    
T  19626094 taagtaaagggtaaaaatggaataaaaaaattataaatcattccgttccattcactttccaaacaattgagtggaaaattagttccattccgtagtaaaa 19626193  T
Q  156 tatccaaacaatggaatgaaatttttgttccactccattccattccattc 205  Q
    |||||||||||| | ||| ||  ||| |||| || | |||||||||||||    
T  19626194 tatccaaacaataggatggaacctttattccgctacgttccattccattc 19626243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 36656892 - 36656799
Alignment:
Q  113 tccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaaatttttgttccactccattccattccattcc 206  Q
    |||||||||||||| || || |||||| ||||||||| || ||||||||| |||||||||| ||||||||||||| |||||||| || ||||||    
T  36656892 tccaaacaatggagcggaaagttagttccattccgtcataaaatatccaagcaatggaatgtaatttttgttccattccattccgttacattcc 36656799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 206
Target Start/End: Original strand, 19848438 - 19848565
Alignment:
Q  74 gaaataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatg 173  Q
    ||||||||||||||||||||     | |||| | |||||||||||||||||| ||| ||| ||||| | |||| || || | ||||||||||||||||||    
T  19848438 gaaataaaaaagttataact-----cgttccgttaactttccaaacaatggaatggaaaactagttccgttccatcataaagtatccaaacaatggaatg 19848532  T
Q  174 aaatttttgttccactccattccattccattcc 206  Q
     ||| ||| ||||| |||||||| |||| ||||    
T  19848533 gaatctttattccattccattccgttccgttcc 19848565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 76 - 254
Target Start/End: Original strand, 12634070 - 12634247
Alignment:
Q  76 aataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaa 175  Q
    |||||||| ||||||| | ||| | |||| || ||||||||||||||||| || ||||||  || |||| |||| || |||||||||||| |||| || |    
T  12634070 aataaaaatgttataattcattccgttccgtcgactttccaaacaatggaatgtgaaatttattccatttcgtcataaaatatccaaacagtggagtgga 12634169  T
Q  176 atttttgttccactccattccattccattccatgctgcttcattctgttccgctcctttagttttagattatccaaaca 254  Q
    || ||| |||| |||| ||||||| | ||| ||  |  ||| |||| ||||||||| |||||||||  |||||||||||    
T  12634170 atattttttccgctccgttccatttcgttcaat-ttcattctttctattccgctccgttagttttaagttatccaaaca 12634247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 3215274 - 3215179
Alignment:
Q  111 tttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatgaaatttttgttccactccattccattccattcc 206  Q
    |||| ||| ||||||||| ||| |||||| |||||||||  | |||||||| |||||||||||| |||||| ||||| ||| ||||  ||||||||    
T  3215274 tttctaaataatggagtgagaagttagttccattccgtcagaaaatatccacacaatggaatgacatttttattccattccgttccgctccattcc 3215179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 28300826 - 28300772
Alignment:
Q  80 aaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaat 134  Q
    |||||||||||| | ||| |||||| |||||||||||||||||||| ||| ||||    
T  28300826 aaaaagttataatttattccattccgtcaactttccaaacaatggaatggaaaat 28300772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 5350354 - 5350402
Alignment:
Q  74 gaaataaaaaagttataactaatttcattccatcaactttccaaacaat 122  Q
    ||||| |||||||||||||| ||| |||| | |||||||||||||||||    
T  5350354 gaaattaaaaagttataacttattccatttcgtcaactttccaaacaat 5350402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 201
Target Start/End: Complemental strand, 37990 - 37864
Alignment:
Q  74 gaaataaaaaagttataactaatttcattccatcaactttccaaacaatggagtgggaaattagtttcattccgtcgtataatatccaaacaatggaatg 173  Q
    ||||||||||| ||||||   ||| |||||| ||| |||||||||||||||||||| || |||  | | |||| ||||  ||||||||||| ||||||||    
T  37990 gaaataaaaaa-ttataatacattccattccgtcatctttccaaacaatggagtggaaagttaactccgttccatcgtgaaatatccaaacgatggaatg 37892  T
Q  174 aaatttttgttccactccattccattcc 201  Q
     ||| | | ||||| || ||||||||||    
T  37891 taatctctattccaatctattccattcc 37864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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