View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2868_high_1 (Length: 460)
Name: NF2868_high_1
Description: NF2868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2868_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 443
Target Start/End: Original strand, 38835764 - 38836189
Alignment:
| Q |
17 |
gtacaatggactatggtgtgatgtactttacagaatagattgtggaaatataaccagtgatgtactttatatttatttatcctttgaagcacactcattt |
116 |
Q |
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| T |
38835764 |
gtacaatggactatggtgtgatgtactttacagaatagattgtggaaatataaccagtgatgtactttatatttatttatcctttgaagcacactcattt |
38835863 |
T |
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| Q |
117 |
accttagtatatttcttttgaagagatccaccttattatatttaataaatcctttgatgataattgataagtgtcgtattttcatcaaatagataaaaat |
216 |
Q |
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| T |
38835864 |
accttagtatatttcttttgaagagatccaccttagtatatttaataaatcctttgatgataattgataagtgtcgtattttcatcaaatagataaaaat |
38835963 |
T |
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| Q |
217 |
actgaaaaagagaatgtgtcatttcaatacctagtcacatatcacaataatattaaaattacaaactcattagtgtgaaattatacagataagaaaataa |
316 |
Q |
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| T |
38835964 |
actgaaaaagagaatgtgtcatttcaatacctagtcacatatcacaataatattaaaattacaaactcattagtgtgaaattatacagataagaaaataa |
38836063 |
T |
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| Q |
317 |
ccataatattcctacttttcatttatattatatcgttctctgaaatctcgtgttcgatctttcttctttannnnnnnnaaaattaaataatttacttgtt |
416 |
Q |
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| T |
38836064 |
ccataatattcctacttttcatttatattatatcgttctctgaaatctcgtgttcgatctttcttcttta-tttttttaaaattaaataatttacttgtt |
38836162 |
T |
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| Q |
417 |
ggctgtgttggtttctttttatttcac |
443 |
Q |
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| T |
38836163 |
ggctgtgttgttttttttgtatttcac |
38836189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 281
Target Start/End: Original strand, 38849261 - 38849362
Alignment:
| Q |
181 |
tgataagtgtcgtattttcatcaaatagataaaaatactgaaaaagagaat----gtgtcatttcaatacctagtcacatatcacaataatattaaaatt |
276 |
Q |
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| T |
38849261 |
tgataagtgtcgtattctcatcaaatagagaaaa---ctgaaaaagagaattaatgggtgatttaaatacctagtcatagagcacaataatattaaaatt |
38849357 |
T |
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| Q |
277 |
acaaa |
281 |
Q |
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| T |
38849358 |
acaaa |
38849362 |
T |
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