View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2868_high_3 (Length: 295)
Name: NF2868_high_3
Description: NF2868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2868_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 20924894 - 20924613
Alignment:
| Q |
1 |
gattttattaactaaagataagtgatattgtatagaatgaatccacttataaacacaagtaacagttggaatgagatgctcttatagttttgggtgaggg |
100 |
Q |
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| T |
20924894 |
gattttattaactaaagataagtgatattgtataaaatgaatccacttaaaaacacaaataacagttggaatgagatgctcttatagttttgggtgaggg |
20924795 |
T |
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| Q |
101 |
ggccaatatttctttgaagtacaaattcagaagagctagataggtgttgaataagaaacattatcaagaatcctttgctttgtaaataacttcagcttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20924794 |
ggccaatatttctttgaagtacaaattcagaagagctagataggtgttgaataagaaacattatcaagaatcctttgctttgtaaataacttcagcttgt |
20924695 |
T |
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| Q |
201 |
ccggacgctctcctgaaccggattagttctgttatcaactccggtttgacgttttcaacaggctccacaatcatctttttga |
282 |
Q |
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| T |
20924694 |
tcggacgctctcctgaaccggattagttctgttatcaactccggtttgacgttttcaacaggctccacaatcatctttttga |
20924613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 279
Target Start/End: Complemental strand, 20936321 - 20936226
Alignment:
| Q |
184 |
aaataacttcagcttgtccggacgctctcctgaaccggattagttctgttatcaactccggtttgacgttttcaacaggctccacaatcatctttt |
279 |
Q |
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| T |
20936321 |
aaataacttcagcttctcccgacgctcttttgaaccgaattagtcctctcatcaactccggtatgaagttttcaacaggcttcacagtcatctttt |
20936226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 279
Target Start/End: Complemental strand, 20954562 - 20954467
Alignment:
| Q |
184 |
aaataacttcagcttgtccggacgctctcctgaaccggattagttctgttatcaactccggtttgacgttttcaacaggctccacaatcatctttt |
279 |
Q |
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| T |
20954562 |
aaataacttcagcttctcctgacgctcttttgaaccgaattagtcctctcaccagctccggtgtgaagctttcaacaggcttcagagtcatctttt |
20954467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 182 - 279
Target Start/End: Complemental strand, 17971310 - 17971213
Alignment:
| Q |
182 |
gtaaataacttcagcttgtccggacgctctcctgaaccggattagttctgttatcaactccggtttgacgttttcaacaggctccacaatcatctttt |
279 |
Q |
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| T |
17971310 |
gtaaataacttcagcttgtcctgacgctctcctgaacctgatcagttctgtcatcaactcgggtttgacattttcagcaggcttcacagtcatctttt |
17971213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 182 - 279
Target Start/End: Complemental strand, 3374300 - 3374203
Alignment:
| Q |
182 |
gtaaataacttcagcttgtccggacgctctcctgaaccggattagttctgttatcaactccggtttgacgttttcaacaggctccacaatcatctttt |
279 |
Q |
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||||||||||||||||| | ||||||||| ||||||| | ||||||||||||||||||||||| ||||||| ||||| ||| |||||||||||||| |
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| T |
3374300 |
gtaaataacttcagcttcatccgacgctctcttgaaccgaagtagttctgttatcaactccggttggacgtttacaacatgcttcacaatcatctttt |
3374203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 277
Target Start/End: Complemental strand, 3366594 - 3366499
Alignment:
| Q |
182 |
gtaaataacttcagcttgtccggacgctctcctgaaccggattagttctgttatcaactccggtttgacgttttcaacaggctccacaatcatctt |
277 |
Q |
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||||||||||||||||| |||||| ||| || ||||||| |||||||| ||||| |||||||||| ||| ||| ||||| | | |||||||||||| |
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| T |
3366594 |
gtaaataacttcagcttctccggatgctttcttgaaccgaattagttcggttattaactccggttggacttttacaacatgtttcacaatcatctt |
3366499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 279
Target Start/End: Complemental strand, 3380426 - 3380329
Alignment:
| Q |
182 |
gtaaataacttcagcttgtccggacgctctcctgaaccggattagttctgttatcaactccggtttgacgttttcaacaggctccacaatcatctttt |
279 |
Q |
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||||||||||||||||| ||| ||||||||| |||| || ||||||||||| ||||||| || | ||||| | ||||| ||| |||||||||||||| |
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| T |
3380426 |
gtaaataacttcagcttctcccgacgctctcttgaagcgaattagttctgtcatcaactttggctggacgtctacaacatgcttcacaatcatctttt |
3380329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 279
Target Start/End: Original strand, 4333488 - 4333583
Alignment:
| Q |
184 |
aaataacttcagcttgtccggacgctctcctgaaccggattagttctgttatcaactccggtttgacgttttcaacaggctccacaatcatctttt |
279 |
Q |
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| T |
4333488 |
aaataacttcaacttctcccgatgctcttttgaaccgaattagtgctttcatcaactccggtataacgtttgcaacaggcttcacaatcatctttt |
4333583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 3364202 - 3364103
Alignment:
| Q |
180 |
ttgtaaataacttcagcttgtccggacgctctcctgaaccggattagttctgttatcaactccggtttgacgttttcaacaggctccacaatcatctttt |
279 |
Q |
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|||||||||||||||||||||| ||||| || |||| || | |||||||| | ||||||||||| ||||| | ||||||||||||||||||||| |
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| T |
3364202 |
ttgtaaataacttcagcttgtctcgacgcccttttgaatcgaaccagttctgtcaataactccggtttcgcgtttagatcaggctccacaatcatctttt |
3364103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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