View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2869_high_4 (Length: 426)
Name: NF2869_high_4
Description: NF2869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2869_high_4 |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 37588 - 37896
Alignment:
| Q |
17 |
cacaagctcctacaacaaatgtaacatcaggtttgcttattataagatatagtaaactaccaatcatgatcctgtataaaccttgatcaacataaacacc |
116 |
Q |
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| T |
37588 |
cacaagctcctacaacaaatgtaacatcaggtttgcttattataagatatagtaaactaccaatcatgatcctgtataaaccttgatcaacataaacacc |
37687 |
T |
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| Q |
117 |
attattatctttggttaactcaacatgtgttgcaactggagttcttttatgacttgcattttcaagatacaccttctacataatgctcatagcatacttg |
216 |
Q |
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| T |
37688 |
attattatctttggttaactcaacatatgttgcaactggagttcttttatgacttacattttcaagatacaccttctacataatgctcatagcatacttg |
37787 |
T |
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| Q |
217 |
cttcgagagataaagattgtatcttccatttgctctac-tgcagacgaaaatatgtcaattcaccaacaagattcatttcaaactcagattgcacttgtc |
315 |
Q |
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||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37788 |
ctttgagagacaaagattgtatcttccatttgctctacttgcagacgaaaatatgtcaattcaccaacaagattcatttcaaactcagactgcacttgtc |
37887 |
T |
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| Q |
316 |
ggacaaaat |
324 |
Q |
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| T |
37888 |
ggacaaaat |
37896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 324 - 418
Target Start/End: Original strand, 37922 - 38017
Alignment:
| Q |
324 |
tccataaacat-gtcatcaatagaaattagagttaccatgatcgttcctccatcaatattcttcacatacaaggtcttgtcaatttcacctttgct |
418 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37922 |
tccataaacatcgtcatcaatggaaattagagttaccatgatctttcctccatcaacattcttcacatacaaggtcttgtcaatttcacctttgct |
38017 |
T |
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