View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2869_low_2 (Length: 495)
Name: NF2869_low_2
Description: NF2869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2869_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 18 - 483
Target Start/End: Original strand, 15124980 - 15125445
Alignment:
| Q |
18 |
gaaacctgtgatttgggatataagttagtttggtgatttaggagaaaaaataaatattttgaagcaataaaaaagttatgaattcaactctcgttctaat |
117 |
Q |
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| T |
15124980 |
gaaacctgtgatttgggatataagttagtttggtgatttaggagaaaaaataaatattttgaagcaataaaaaagttatgaattcaactctcgttctaat |
15125079 |
T |
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| Q |
118 |
aaaaataactatactagtattgcatatttaatcgaatttaaaaacctgtgattccgattctgattgtgattccgacgatgtaattggaatatcttcgaca |
217 |
Q |
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| T |
15125080 |
aaaaataactatactagtattgaatatttaatcgaatttaaaaacctgtgattccgattctgattgtgattccgacgatgtaattggaatatcttcgaca |
15125179 |
T |
|
| Q |
218 |
taaagtagagcacatgtagaaactaatgcaaggaggaatattgaaaagaaaaaacatgtcttgaggtttgcacaaaactcgttgcaagccaaggtttttg |
317 |
Q |
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| T |
15125180 |
taaagtagagcgcatgtagaaactaatgcaaggaggaatattgaaaagaaaaaacatgtcttgaggtttgcacaaaactcattgcaagccaaggtttttg |
15125279 |
T |
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| Q |
318 |
tgaaagggaactttgtgtagagtttgtcgtatgagccagcagcataaccaaggacattaccgacggccatgaaaaaagagaacatcccattgccaattct |
417 |
Q |
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| T |
15125280 |
tgaaagggaactttgtgtagagtttgtcgtatgagccagcagcataaccaaggacattaccgacggccatgaaaaaagagaacatcccattgccaattct |
15125379 |
T |
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| Q |
418 |
cattcgacgatgatcaccaccagcgaggtcaccaatgaaggcacgacaaggtccttgaagcatatt |
483 |
Q |
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| T |
15125380 |
cattcgacggtgatcaccaccagcgaggtcaccaatgaaggcacgacaaggtccttgaagcatatt |
15125445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 350 - 483
Target Start/End: Complemental strand, 55076741 - 55076608
Alignment:
| Q |
350 |
gagccagcagcataaccaaggacattaccgacggccatgaaaaaagagaacatcccattgccaattctcattcgacgatgatcaccaccagcgaggtcac |
449 |
Q |
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||||| || ||||||||||||| ||| || ||||||||||| ||||||||||| ||||||| |||||||||| ||| |||||||| |||| ||||||| |
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| T |
55076741 |
gagccggcggcataaccaaggatatttcccacggccatgaagaaagagaacatggcattgcccattctcattctacggtgatcaccggcagcaaggtcac |
55076642 |
T |
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| Q |
450 |
caatgaaggcacgacaaggtccttgaagcatatt |
483 |
Q |
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| T |
55076641 |
caaggaaggcacgacagggtccttgaagcatatt |
55076608 |
T |
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