View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2869_low_3 (Length: 489)
Name: NF2869_low_3
Description: NF2869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2869_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 49272173 - 49271687
Alignment:
| Q |
1 |
aaccatgaatttcattcaactcttttgcttcctttctctcttagttttgttcaacacaaagccactacaaggagctgaaccagaggcagtagtagacaaa |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49272173 |
aaccatgaaattcattcaactcttttgcttcctttctctcttagttttgttcaacacaaagccactacaaggagctgaaccagaggcagtagtagacaaa |
49272074 |
T |
|
| Q |
101 |
caaggtaaccctcttaaaccaggtgaaggttactacgtatttccactttgggccgacaatggaggcattacattaggacatacaagaaacaaaacatgcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
49272073 |
caaggtaaccctcttaaaccaggtgaaggttactacgtatttccactttgggccgacaatggaggcattacattaggacacacaagaaacaaaacatgcc |
49271974 |
T |
|
| Q |
201 |
ctcttgatgtaatccgtaaccctgatgcaatcggcacaccggtgtatttctctgcatcaggtcttgattacattccaactctcactgacctcaccattga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49271973 |
ctcttgatgtaatccgtaaccctgatgcaatcggcacaccggtgtatttctctgcatcaggtcttgattacattccaactctcactgacctcaccattga |
49271874 |
T |
|
| Q |
301 |
gattcctattctgggtagtccttgcaatgaaccaaaagtgtggaggcttttaaaggttgggtctgggttttggtttgtgagcactggtggtacagctggg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49271873 |
gattcctattctgggtagtccttgcaatgaaccaaaagtgtggaggcttttaaaggttgggtctgggttttggtttgtgagcactggtggtgcagctggg |
49271774 |
T |
|
| Q |
401 |
gatcttgttagcaagttcaaaattgagaggcttgcaggtgaacatgcttatgagatatatagctttaagttctgtctctctgctcct |
487 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
49271773 |
gatcttgttagcaagttcaagattgagaggcttgcaggtgaacatgcttatgagatatatagctttaagttctgtccctctgttcct |
49271687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 5 - 466
Target Start/End: Complemental strand, 49278092 - 49277625
Alignment:
| Q |
5 |
atgaatttcattcaactcttttgcttcctttctctcttagttttgttcaacacaaagccactacaaggagctgaaccagaggcagtagtagacaaacaag |
104 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
49278092 |
atgaaattcattcaactcttttgcttcctttctctctcagcgttgttcaacacaaaggcactacaaggagataaaccagaggcagtagtagacaaacaag |
49277993 |
T |
|
| Q |
105 |
gtaaccctcttaaaccaggtgaaggttactacgtatttccactttgggccgacaatggaggcattacattaggacatacaagaaacaaaacatgccctct |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
49277992 |
gtaaccctcttaaaccaggtgaaggttactacgtatttccactttgggctgacaatggaggcataacattaggacaaacaagaaacaaaacatgccctct |
49277893 |
T |
|
| Q |
205 |
tgatgtaatccgtaaccctgatgcaatcggcacaccggtgtatttctctgcatcaggtcttgattacattccaactctcactgacctcaccattgagatt |
304 |
Q |
| |
|
|||||| |||||||||||||| || || ||| | || || ||||||| || || | | |||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
49277892 |
tgatgttatccgtaaccctgaagccattggctcgccagtttatttctatgaatatgaacatgattacattccaactctcactgatctcaccgttgagatt |
49277793 |
T |
|
| Q |
305 |
cctattctgggtagtccttgcaatgaaccaaaagtgtggaggcttttaaagg------ttgggtctgggttttggtttgtgagcactggtggtacagctg |
398 |
Q |
| |
|
|| || ||||||||||||||| ||| ||||||||||| | ||| ||| | | | || ||||||||||||||||||| |||||| ||| |
|
|
| T |
49277792 |
ccaatattgggtagtccttgcagtgagagaaaagtgtggaagatttcaaaagagggaactagagctaggttttggtttgtgagcaccggtggttttcctg |
49277693 |
T |
|
| Q |
399 |
gggatcttgttagcaagttcaaaattgagaggcttgcaggtgaacatgcttatgagatatatagcttt |
466 |
Q |
| |
|
|| | ||| ||||| |||| || ||||||||||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
49277692 |
ggaacctttttagccagtttaagattgagaggcttgagggagaacatgcttatgagatttatagcttt |
49277625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 33 - 434
Target Start/End: Complemental strand, 49269696 - 49269292
Alignment:
| Q |
33 |
tttctctcttagttttgttcaacacaaagccactacaaggagctgaaccagaggcagtagtagacaaacaaggtaaccctcttaaaccaggtgaaggtta |
132 |
Q |
| |
|
|||||||||| || || ||||||||||| |||||||||||||| ||||||| ||||||||||| ||| ||||| |||||| | |||| ||||||| |
|
|
| T |
49269696 |
tttctctcttggtgctgctcaacacaaaggcactacaaggagctaaaccagatagagtagtagacagacacggtaagcctcttgagtcaggaaaaggtta |
49269597 |
T |
|
| Q |
133 |
ctacgtatttccactttgggcc---gacaatggaggcattacatt-aggacatacaagaaacaaaacatgccctcttgatgtaatccgtaaccctgatgc |
228 |
Q |
| |
|
||| |||| | | ||||||| || | ||||||| | ||||| || || ||||||||||||||||| |||||||||||||| ||||||||| | | |
|
|
| T |
49269596 |
ctatgtatggcaattttgggctcatgatattggaggcttaacattgagctca-acaagaaacaaaacatgtcctcttgatgtaattcgtaaccctaaaga |
49269498 |
T |
|
| Q |
229 |
aatcggcacaccggtgtatttctctgcatcaggtcttgattacattccaactctcactgacctcaccattgagattcctattctgggtagtccttgcaat |
328 |
Q |
| |
|
| ||||| | || ||||| ||||||||| ||||| || | |||||||||||| ||||| || ||||| | |||| || | ||||| | ||||| |
|
|
| T |
49269497 |
actcggctcgccagtgtacttctctgcaccaggttttaaacacattccaactcaaactgatctttccattaaaattcgatttaggagtagttcatgcaac |
49269398 |
T |
|
| Q |
329 |
gaaccaaaagtgtggaggcttttaaaggttgggtctgggttttggtttgtgagcactggtggtacagctggggatcttgttagcaagttcaaaattgaga |
428 |
Q |
| |
|
| ||||||||| || ||||| ||| | || |||||||| |||||| |||||||||||||| |||||||||| ||||||| |||||||| ||||||| |
|
|
| T |
49269397 |
cagtcaaaagtgttgaagctttcaaaagagggatctgggttctggtttttgagcactggtggtgtagctggggatgttgttagtaagttcaagattgaga |
49269298 |
T |
|
| Q |
429 |
ggcttg |
434 |
Q |
| |
|
||||| |
|
|
| T |
49269297 |
agcttg |
49269292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University