View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2870-Insertion-1 (Length: 646)

Name: NF2870-Insertion-1
Description: NF2870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2870-Insertion-1
NF2870-Insertion-1
[»] chr4 (16 HSPs)
chr4 (332-646)||(35933333-35933643)
chr4 (117-169)||(35933641-35933693)
chr4 (53-141)||(2097082-2097170)
chr4 (145-219)||(51379812-51379886)
chr4 (59-141)||(38020377-38020459)
chr4 (50-118)||(8456800-8456868)
chr4 (50-118)||(30979818-30979886)
chr4 (158-210)||(42085699-42085751)
chr4 (251-317)||(26839115-26839181)
chr4 (274-323)||(4939480-4939529)
chr4 (64-113)||(20228277-20228326)
chr4 (274-323)||(25199391-25199440)
chr4 (275-319)||(24474040-24474084)
chr4 (50-98)||(29728814-29728862)
chr4 (276-320)||(36196877-36196921)
chr4 (53-101)||(51285193-51285241)
[»] chr8 (8 HSPs)
chr8 (72-141)||(5431645-5431713)
chr8 (64-143)||(26055459-26055538)
chr8 (65-141)||(12020069-12020145)
chr8 (49-141)||(20472381-20472473)
chr8 (159-193)||(8407504-8407538)
chr8 (276-321)||(32202540-32202585)
chr8 (259-319)||(2110862-2110922)
chr8 (72-135)||(18069296-18069359)
[»] chr3 (8 HSPs)
chr3 (53-141)||(42529433-42529521)
chr3 (50-118)||(28590388-28590456)
chr3 (149-195)||(20814725-20814771)
chr3 (71-141)||(51569826-51569896)
chr3 (263-320)||(193404-193461)
chr3 (64-141)||(21498416-21498492)
chr3 (274-323)||(38892085-38892134)
chr3 (274-323)||(43525747-43525796)
[»] chr5 (4 HSPs)
chr5 (55-141)||(9860748-9860835)
chr5 (50-113)||(6296848-6296911)
chr5 (54-101)||(10635360-10635407)
chr5 (53-101)||(29814976-29815024)
[»] chr2 (9 HSPs)
chr2 (50-141)||(10429856-10429947)
chr2 (50-113)||(32103573-32103636)
chr2 (259-308)||(8752437-8752486)
chr2 (76-142)||(33498786-33498851)
chr2 (274-320)||(40869450-40869496)
chr2 (51-137)||(41508169-41508255)
chr2 (50-119)||(1652530-1652599)
chr2 (149-210)||(6807509-6807570)
chr2 (72-141)||(33859235-33859304)
[»] chr1 (10 HSPs)
chr1 (59-141)||(44751954-44752036)
chr1 (50-141)||(10799194-10799285)
chr1 (54-118)||(36472646-36472710)
chr1 (50-113)||(32336737-32336800)
chr1 (71-142)||(32423540-32423611)
chr1 (263-309)||(48817169-48817215)
chr1 (274-323)||(2497929-2497978)
chr1 (52-141)||(9454461-9454550)
chr1 (51-112)||(18635718-18635779)
chr1 (93-141)||(15682180-15682228)
[»] chr7 (3 HSPs)
chr7 (50-101)||(33084968-33085019)
chr7 (51-113)||(44184251-44184313)
chr7 (274-323)||(45222175-45222224)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 332 - 646
Target Start/End: Complemental strand, 35933643 - 35933333
Alignment:
Q  332 ttggcaaataaagccttagatttcttaatgtggccatgcacttcacaaattaattcaatgtttcttgcaattcttataggagactgtcatgattcttatg 431  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35933643 ttggcaaataaagccttagatctcttaatgtggccatgcacttcacaaattaattcaatgtttcttgcaattcttataggagactgtcatgattcttatg 35933544  T
Q  432 gacataagcatagatgcgttactggagcaatatacaattatacaatgcaattaaaattagctaacgccgatgcttcatctgaattaaaatgtaagcattt 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35933543 gacataagcatagatgcgttactggagcaatatacaattatacaatgcaattaaaattagctaacgccgatgcttcatctgaattaaaatgtaagcattt 35933444  T
Q  532 acgaattaaattcttaatttgcttgttttatttgaagataggtccttgaatttattacttactttcctcccttaattacagataacttgacagaggcact 631  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    ||||||||||||||||||||||||||||||||||||||||    
T  35933443 acgaattaaattcttaatttgcttgttttatttgaagataggtccttaaatttatt----actttcctcccttaattacagataacttgacagaggcact 35933348  T
Q  632 tatgttcttgtcaca 646  Q
    |||||||||||||||    
T  35933347 tatgttcttgtcaca 35933333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 35933693 - 35933641
Alignment:
Q  117 gatcaaagagtaaatattaatctaatatattaaaaataaccagggtaaaattg 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35933693 gatcaaagagtaaatattaatctaatatattaaaaataaccagggtaaaattg 35933641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 2097082 - 2097170
Alignment:
Q  53 ggttgagtagatcaactcgtttgagctaagggataaggacttggaggtcatgagttcaaactcggatcaaagagtaaatattaatctaa 141  Q
    ||||| |||| |||||| |||||||||||||| |||||| ||||||||| || |||||||| ||||  |  ||||||||||||||||||    
T  2097082 ggttgggtagctcaactagtttgagctaagggttaaggagttggaggtcctgggttcaaacccggacaagggagtaaatattaatctaa 2097170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 51379812 - 51379886
Alignment:
Q  145 attaaaaataaccagggtaaaattgagagaagaaatgataagctataagttcatatgctacttgaagtgacttat 219  Q
    |||||| || || ||||||||||| |||||| ||||||||||||| ||| ||| ||||||||||||||| |||||    
T  51379812 attaaagattacaagggtaaaattaagagaaaaaatgataagctacaagctcaaatgctacttgaagtgccttat 51379886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 141
Target Start/End: Original strand, 38020377 - 38020459
Alignment:
Q  59 gtagatcaactcgtttgagctaagggataaggacttggaggtcatgagttcaaactcggatcaaagagtaaatattaatctaa 141  Q
    |||| |||||| |||||||||||||| |||||| |||||||||    |||||||| ||||  || ||||||||||||||||||    
T  38020377 gtagctcaactggtttgagctaagggttaaggagttggaggtccaaggttcaaacccggacgaaggagtaaatattaatctaa 38020459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 8456800 - 8456868
Alignment:
Q  50 gggggttgagtagatcaactcgtttgagctaagggataaggacttggaggtcatgagttcaaactcgga 118  Q
    |||| ||| |||| |||||| ||||||||||||||||||||| ||||| ||| || |||||||| ||||    
T  8456800 ggggcttgggtagctcaactggtttgagctaagggataaggagttggatgtcctgggttcaaacccgga 8456868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 30979818 - 30979886
Alignment:
Q  50 gggggttgagtagatcaactcgtttgagctaagggataaggacttggaggtcatgagttcaaactcgga 118  Q
    |||| ||| |||| |||||| ||||||||||||||||||||| ||||||||| || | |||||| ||||    
T  30979818 ggggattgggtagctcaactggtttgagctaagggataaggagttggaggtcttgggctcaaacccgga 30979886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 42085699 - 42085751
Alignment:
Q  158 agggtaaaattgagagaagaaatgataagctataagttcatatgctacttgaa 210  Q
    ||||||||||||| |||| ||||||||||||||||| ||| | ||||||||||    
T  42085699 agggtaaaattgaaagaaaaaatgataagctataagctcaaacgctacttgaa 42085751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 317
Target Start/End: Complemental strand, 26839181 - 26839115
Alignment:
Q  251 taagcttttgagaaaaca-ttgtcaccaaacaggtctatttttgtcatatgagcttataaactataag 317  Q
    ||||||| |||||||| | || |||||||||||||||||||  ||||||||||||||||| |||||||    
T  26839181 taagcttgtgagaaaaaaattatcaccaaacaggtctattta-gtcatatgagcttataagctataag 26839115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 4939480 - 4939529
Alignment:
Q  274 accaaacaggtctatttttgtcatatgagcttataaactataagctaaaa 323  Q
    |||||||||  || ||||||||| | ||||||||||||||||||||||||    
T  4939480 accaaacagaactttttttgtcaaacgagcttataaactataagctaaaa 4939529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 20228277 - 20228326
Alignment:
Q  64 tcaactcgtttgagctaagggataaggacttggaggtcatgagttcaaac 113  Q
    |||||| |||||||||||||| |||||| ||||||||| || ||||||||    
T  20228277 tcaactagtttgagctaagggttaaggagttggaggtcttgggttcaaac 20228326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 25199391 - 25199440
Alignment:
Q  274 accaaacaggtctatttttgtcatatgagcttataaactataagctaaaa 323  Q
    |||||||||  || ||||||||| | ||||||||||||||||||||||||    
T  25199391 accaaacagagctttttttgtcaaacgagcttataaactataagctaaaa 25199440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 24474084 - 24474040
Alignment:
Q  275 ccaaacaggtctatttttgtcatatgagcttataaactataagct 319  Q
    |||||||||||| ||||  |||||||||||||||| |||||||||    
T  24474084 ccaaacaggtcttttttaatcatatgagcttataagctataagct 24474040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 29728862 - 29728814
Alignment:
Q  50 gggggttgagtagatcaactcgtttgagctaagggataaggacttggag 98  Q
    |||||||| |||| |||||| |||||||||||||| |||||| ||||||    
T  29728862 gggggttgggtagctcaactggtttgagctaagggttaaggagttggag 29728814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 36196921 - 36196877
Alignment:
Q  276 caaacaggtctatttttgtcatatgagcttataaactataagcta 320  Q
    |||||||  |||||||||||| | |||||||||||||||||||||    
T  36196921 caaacagagctatttttgtcaaacgagcttataaactataagcta 36196877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 51285241 - 51285193
Alignment:
Q  53 ggttgagtagatcaactcgtttgagctaagggataaggacttggaggtc 101  Q
    ||||| |||| |||||| |||||||||||||||||| || |||||||||    
T  51285241 ggttgggtagctcaactagtttgagctaagggataatgaattggaggtc 51285193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 5431645 - 5431713
Alignment:
Q  72 tttgagctaagggataaggacttggaggtcatgagttcaaactcggatcaaagagtaaatattaatctaa 141  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| |||||||    
T  5431645 tttgagctaagggataaggagttggaggtc-tgagttcaaactcggatgaaagagtaaatataaatctaa 5431713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 26055459 - 26055538
Alignment:
Q  64 tcaactcgtttgagctaagggataaggacttggaggtcatgagttcaaactcggatcaaagagtaaatattaatctaata 143  Q
    |||||| ||||| | ||||||||||||| |||||||||||| ||||||||| | || |||||||||||||||||||||||    
T  26055459 tcaactggtttgtgataagggataaggagttggaggtcatgggttcaaacttgaatgaaagagtaaatattaatctaata 26055538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 12020069 - 12020145
Alignment:
Q  65 caactcgtttgagctaagggataaggacttggaggtcatgagttcaaactcggatcaaagagtaaatattaatctaa 141  Q
    ||||| ||||||| ||||||||||||| ||||||||| || |||||||| |  || || ||||||||||||||||||    
T  12020069 caactggtttgagttaagggataaggagttggaggtcctgggttcaaacccaaatgaatgagtaaatattaatctaa 12020145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 20472381 - 20472473
Alignment:
Q  49 agggggttgagtagatcaactcgtttgagctaagggataaggacttggaggtcatgagttcaaactcggatcaaagagtaaatattaatctaa 141  Q
    ||||||||| |||| ||||||  ||||||||||||||||| || ||||||    || |||||||||| ||   ||||||||||||||||||||    
T  20472381 agggggttgggtagttcaactactttgagctaagggataaagagttggagactctgggttcaaactcagacggaagagtaaatattaatctaa 20472473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 193
Target Start/End: Complemental strand, 8407538 - 8407504
Alignment:
Q  159 gggtaaaattgagagaagaaatgataagctataag 193  Q
    ||||||||||||||||| |||||||||||||||||    
T  8407538 gggtaaaattgagagaaaaaatgataagctataag 8407504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 32202585 - 32202540
Alignment:
Q  276 caaacaggtctatttttgtcatatgagcttataaactataagctaa 321  Q
    |||||| | |||||||||||||||||||||| || |||||||||||    
T  32202585 caaacacgcctatttttgtcatatgagcttacaagctataagctaa 32202540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 2110922 - 2110862
Alignment:
Q  259 tgagaaaacattgtcaccaaacaggtctatttttgtcatatgagcttataaactataagct 319  Q
    |||||||| | ||| | ||||||||||  | |||||||||||||||||||| |||||||||    
T  2110922 tgagaaaaaaatgttaacaaacaggtccttctttgtcatatgagcttataagctataagct 2110862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 18069296 - 18069359
Alignment:
Q  72 tttgagctaagggataaggacttggaggtcatgagttcaaactcggatcaaag-agtaaatatta 135  Q
    |||||| ||||||||||||| ||| |||||||  ||||||||||||| ||||| |||||||||||    
T  18069296 tttgagttaagggataaggagttgaaggtcataggttcaaactcgga-caaagtagtaaatatta 18069359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 42529433 - 42529521
Alignment:
Q  53 ggttgagtagatcaactcgtttgagctaagggataaggacttggaggtcatgagttcaaactcggatcaaagagtaaatattaatctaa 141  Q
    ||||| |||| ||| || ||||||||||||||||||||| ||||||||||||||||||||||   |  |||||||||||||||||||||    
T  42529433 ggttgggtagctcagctggtttgagctaagggataaggagttggaggtcatgagttcaaacttaaacgaaagagtaaatattaatctaa 42529521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 28590456 - 28590388
Alignment:
Q  50 gggggttgagtagatcaactcgtttgagctaagggataaggacttggaggtcatgagttcaaactcgga 118  Q
    |||||||| |||  |||||| ||||||||||||||| ||||  ||||||||| ||||||||||| ||||    
T  28590456 gggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcctgagttcaaacccgga 28590388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 20814725 - 20814771
Alignment:
Q  149 aaaataaccagggtaaaattgagagaagaaatgataagctataagtt 195  Q
    |||| ||| |||||||||||||||||||| |||| ||||||||||||    
T  20814725 aaaacaacaagggtaaaattgagagaagagatgacaagctataagtt 20814771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 51569826 - 51569896
Alignment:
Q  71 gtttgagctaagggataaggacttggaggtcatgagttcaaactcggatcaaagagtaaatattaatctaa 141  Q
    ||||||||||||||| ||||| ||||||||  || |||||||||||||  || ||| | ||||||||||||    
T  51569826 gtttgagctaagggaaaaggagttggaggttctgggttcaaactcggacgaaggagaagatattaatctaa 51569896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 320
Target Start/End: Complemental strand, 193461 - 193404
Alignment:
Q  263 aaaacattgtcaccaaacaggtctatttttgtcatatgagcttataaactataagcta 320  Q
    |||| ||||| |||||||||  |||||||||||| | |||||||||| ||||||||||    
T  193461 aaaaaattgttaccaaacagagctatttttgtcaaacgagcttataagctataagcta 193404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 21498492 - 21498416
Alignment:
Q  64 tcaactcgtttgagctaagggataaggacttggaggtcatgagttcaaactcggatcaaagagtaaatattaatctaa 141  Q
    |||||| |||||||||||||||||| || ||||||||| ||||||||||  | ||  || |||||||||||| |||||    
T  21498492 tcaactagtttgagctaagggataacgagttggaggtc-tgagttcaaatccagacgaatgagtaaatattagtctaa 21498416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 38892085 - 38892134
Alignment:
Q  274 accaaacaggtctatttttgtcatatgagcttataaactataagctaaaa 323  Q
    |||||||||  || ||||||||| | ||||||||||||||||||||||||    
T  38892085 accaaacagagctttttttgtcaaacgagcttataaactataagctaaaa 38892134  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 43525796 - 43525747
Alignment:
Q  274 accaaacaggtctatttttgtcatatgagcttataaactataagctaaaa 323  Q
    |||||||||  || ||||||||| |||||||||||| |||||||||||||    
T  43525796 accaaacagagctttttttgtcaaatgagcttataagctataagctaaaa 43525747  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 9860835 - 9860748
Alignment:
Q  55 ttgagtagatcaactcgtttgagctaagggataa-ggacttggaggtcatgagttcaaactcggatcaaagagtaaatattaatctaa 141  Q
    |||||||| |||||| |||||||||||||| ||| ||| ||||||||| ||||||||||||| ||  || ||||||||| ||||||||    
T  9860835 ttgagtagctcaactggtttgagctaagggttaaaggagttggaggtcctgagttcaaactcagacaaaggagtaaatactaatctaa 9860748  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 6296848 - 6296911
Alignment:
Q  50 gggggttgagtagatcaactcgtttgagctaagggataaggacttggaggtcatgagttcaaac 113  Q
    |||||||| |||| |||| | ||||||||||||||||||||| ||||||||  || ||||||||    
T  6296848 gggggttgggtagctcaattggtttgagctaagggataaggagttggaggttctgggttcaaac 6296911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 10635407 - 10635360
Alignment:
Q  54 gttgagtagatcaactcgtttgagctaagggataaggacttggaggtc 101  Q
    |||| |||| |||||| ||||||||||||||||||||| |||||||||    
T  10635407 gttgggtagctcaactggtttgagctaagggataaggagttggaggtc 10635360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 29815024 - 29814976
Alignment:
Q  53 ggttgagtagatcaactcgtttgagctaagggataaggacttggaggtc 101  Q
    ||||| |||| |||| | ||||||||||||||||||||| |||||||||    
T  29815024 ggttgggtagctcaattggtttgagctaagggataaggagttggaggtc 29814976  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 10429947 - 10429856
Alignment:
Q  50 gggggttgagtagatcaactcgtttgagctaagggataaggacttggaggtcatgagttcaaactcggatcaaagagtaaatattaatctaa 141  Q
    |||||||| |||| |||||| ||||||||||||||||||||| | ||||||| |  |||||||| | ||  || ||||||||||||||||||    
T  10429947 gggggttgggtagctcaactggtttgagctaagggataaggagtaggaggtctttggttcaaacccagaaaaaggagtaaatattaatctaa 10429856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 32103573 - 32103636
Alignment:
Q  50 gggggttgagtagatcaactcgtttgagctaagggataaggacttggaggtcatgagttcaaac 113  Q
    |||||||| |||| |||||| |||||||||||||||| |||| |||||||||||| ||||||||    
T  32103573 gggggttgggtagctcaactagtttgagctaagggatgaggagttggaggtcatgggttcaaac 32103636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 8752486 - 8752437
Alignment:
Q  259 tgagaaaacattgtcaccaaacaggtctatttttgtcatatgagcttata 308  Q
    |||||||| ||| |||||||||||||||||||| ||||||||||||||||    
T  8752486 tgagaaaaaattatcaccaaacaggtctattttggtcatatgagcttata 8752437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 33498786 - 33498851
Alignment:
Q  76 agctaagggataaggacttggaggtcatgagttcaaactcggatcaaagagtaaatattaatctaat 142  Q
    ||||||||| |||  | ||||||||| ||||||||||| |||| ||| |||||||||||||||||||    
T  33498786 agctaagggttaataagttggaggtc-tgagttcaaacgcggaccaacgagtaaatattaatctaat 33498851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 40869450 - 40869496
Alignment:
Q  274 accaaacaggtctatttttgtcatatgagcttataaactataagcta 320  Q
    |||||||||  || ||||||||| |||||||||||||||||||||||    
T  40869450 accaaacagaactttttttgtcaaatgagcttataaactataagcta 40869496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 41508255 - 41508169
Alignment:
Q  51 ggggttgagtagatcaactcgtttgagctaagggataaggacttggaggtcatgagttcaaactcggatcaaagagtaaatattaat 137  Q
    |||||||||||| | || |  |||||||||||||||||| | || |||||  ||||||||||| ||||  || ||||||||||||||    
T  41508255 ggggttgagtagttaaattgatttgagctaagggataagaagttagaggttctgagttcaaacccggacgaaggagtaaatattaat 41508169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 1652530 - 1652599
Alignment:
Q  50 gggggttgagtagatcaactcgtttgagctaagggataaggacttggaggtcatgagttcaaactcggat 119  Q
    |||| ||| |||| |||||| ||||||||||||||||||| | ||||||||| |  |||||||| |||||    
T  1652530 ggggattgggtagctcaactggtttgagctaagggataagaaattggaggtcctaggttcaaacccggat 1652599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 6807570 - 6807509
Alignment:
Q  149 aaaataaccagggtaaaattgagagaagaaatgataagctataagttcatatgctacttgaa 210  Q
    |||||||  ||||||||||||  |||| ||||||||||||||||| ||| | ||||||||||    
T  6807570 aaaataataagggtaaaattggaagaaaaaatgataagctataagctcaaacgctacttgaa 6807509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 33859304 - 33859235
Alignment:
Q  72 tttgagctaagggataaggacttggaggtcatgagttcaaactcggatcaaagagtaaatattaatctaa 141  Q
    |||||| ||||  ||||||| || ||||||||||||| |||| ||||  || ||||||||||||||||||    
T  33859304 tttgagataagatataaggatttagaggtcatgagtttaaacccggacgaatgagtaaatattaatctaa 33859235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 44752036 - 44751954
Alignment:
Q  59 gtagatcaactcgtttgagctaagggataaggacttggaggtcatgagttcaaactcggatcaaagagtaaatattaatctaa 141  Q
    |||| |||||| ||||||||||||||||||||  ||||||||  || |||||||| ||||  || ||||||||||||||||||    
T  44752036 gtagctcaactggtttgagctaagggataaggggttggaggttctgggttcaaacccggacaaatgagtaaatattaatctaa 44751954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 10799194 - 10799285
Alignment:
Q  50 gggggttgagtagatcaactcgtttgagctaagggataaggacttggaggtcatgagttcaaactcggatcaaagagtaaatattaatctaa 141  Q
    |||| ||| |||| |||||| ||||||||||||||||||| | ||| || || || ||||||||  |||| || ||||||||||||||||||    
T  10799194 ggggattgggtagctcaactagtttgagctaagggataagtagttgaagttcctgggttcaaaccaggatgaaggagtaaatattaatctaa 10799285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 36472710 - 36472646
Alignment:
Q  54 gttgagtagatcaactcgtttgagctaagggataaggacttggaggtcatgagttcaaactcgga 118  Q
    |||| |||| |||||| || |||||||||||||||||| ||||||||| || |||||||| ||||    
T  36472710 gttgggtagctcaactggtctgagctaagggataaggagttggaggtcctgggttcaaacccgga 36472646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 32336800 - 32336737
Alignment:
Q  50 gggggttgagtagatcaactcgtttgagctaagggataaggacttggaggtcatgagttcaaac 113  Q
    |||||||| |||| ||||||||||| || ||||||||||||| ||| ||||| || ||||||||    
T  32336800 gggggttgggtagctcaactcgtttaagttaagggataaggagttgaaggtcttgggttcaaac 32336737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 32423611 - 32423540
Alignment:
Q  71 gtttgagctaagggataaggacttggaggtcatgagttcaaactcggatcaaagagtaaatattaatctaat 142  Q
    |||||| |||||||||||| | |||||| || || |||||||| ||||  || |||||||||||||||||||    
T  32423611 gtttgaactaagggataagaagttggagttcttgggttcaaacccggacaaaggagtaaatattaatctaat 32423540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 48817215 - 48817169
Alignment:
Q  263 aaaacattgtcaccaaacaggtctatttttgtcatatgagcttataa 309  Q
    |||| ||||| |||||||||||| ||||| |||||||||||||||||    
T  48817215 aaaaaattgttaccaaacaggtccattttggtcatatgagcttataa 48817169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 2497978 - 2497929
Alignment:
Q  274 accaaacaggtctatttttgtcatatgagcttataaactataagctaaaa 323  Q
    |||||||||  || ||||||||| | ||||||||||||||||||||||||    
T  2497978 accaaacagagctttttttgtcaaacgagcttataaactataagctaaaa 2497929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 9454461 - 9454550
Alignment:
Q  52 gggttgagtagatcaactcgtttgagctaagggataaggacttggaggtcatgagttcaaactcggatcaaagagtaaatattaatctaa 141  Q
    ||||||||||  |||| | ||||||||||||  ||||||| ||| ||||| ||  ||||||||| ||   ||||||||||||||||||||    
T  9454461 gggttgagtaactcaagtggtttgagctaagatataaggagttgaaggtcctggattcaaactcagagggaagagtaaatattaatctaa 9454550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 18635779 - 18635718
Alignment:
Q  51 ggggttgagtagatcaactcgtttgagctaagggataaggacttggaggtcatgagttcaaa 112  Q
    ||||||| |||| |||||| || |||||||||||||||||| || |||||| || |||||||    
T  18635779 ggggttgggtagttcaactggtctgagctaagggataaggagtttgaggtcctgggttcaaa 18635718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 15682228 - 15682180
Alignment:
Q  93 ttggaggtcatgagttcaaactcggatcaaagagtaaatattaatctaa 141  Q
    ||||||||| || |||||||| ||||| || ||||||||||||||||||    
T  15682228 ttggaggtcctgggttcaaacccggatgaaggagtaaatattaatctaa 15682180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 33085019 - 33084968
Alignment:
Q  50 gggggttgagtagatcaactcgtttgagctaagggataaggacttggaggtc 101  Q
    |||||||| |||| |||||| ||||||||||||||||| ||| |||||||||    
T  33085019 gggggttgggtagctcaactggtttgagctaagggatatggagttggaggtc 33084968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 44184313 - 44184251
Alignment:
Q  51 ggggttgagtagatcaactcgtttgagctaagggataaggacttggaggtcatgagttcaaac 113  Q
    |||||||||||  |||||| |||||| ||||||| ||| || |||||||||||| ||||||||    
T  44184313 ggggttgagtaactcaactggtttgaactaagggttaatgagttggaggtcatgtgttcaaac 44184251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 45222175 - 45222224
Alignment:
Q  274 accaaacaggtctatttttgtcatatgagcttataaactataagctaaaa 323  Q
    |||||||||  || ||||||||| | ||||||||||||||||||||||||    
T  45222175 accaaacagaactttttttgtcaaacgagcttataaactataagctaaaa 45222224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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