View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2870-Insertion-2 (Length: 482)

Name: NF2870-Insertion-2
Description: NF2870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2870-Insertion-2
NF2870-Insertion-2
[»] chr6 (1 HSPs)
chr6 (8-482)||(10625257-10625731)


Alignment Details
Target: chr6 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 8 - 482
Target Start/End: Original strand, 10625257 - 10625731
Alignment:
Q  8 ggatccaaatattgtgaaaacctccccaaaaatgatctataagcaggaatgacaagagatgatattgaaactcttagctcagatttaagttgttcatcgt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10625257 ggatccaaatattgtgaaaacctccccaaaaatgatctataagcaggaatcacaagagatgatattgaaactcttagctcagatttaagttgttcatcat 10625356  T
Q  108 gcataacccaagtgctttgggttttatgtatctcatcaaacaatgtattgaaagtcttgaacctttccttcaatgctggctttggaaccttcccgttatt 207  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10625357 gcataacccaagtgctttgtgtcttatgtatctcatcaaacaatgtattgaaagtcttgaacctttccttcaatgctggctttggaaccttcccgttatt 10625456  T
Q  208 atcatttagaccttttggacttaaacaattcaatatctttccccatgtttctatttgatagtttttgtggtaagttctcagctctgttgatctcttacga 307  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10625457 atcatttagtccttttggacttaaacaatttaatatctttccccatgtttctatttgatagtttttgtggtaagttctcagctctgttgatctcttacga 10625556  T
Q  308 taccaagtttcacccatcacttgataaaattcagttgaagattttattttttgaacaatgtaccttccattgttcatcataaagatgcaacttaatggta 407  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10625557 taccatgtttcacccatcacttgataaaattcagttgaagattttattttttgaacaatgtaccttccattgttcatcataaagatgcaacttaatggta 10625656  T
Q  408 cttctttatacaacttagcttttccttcaagatttgtgtccagtaattccattacacgtgtcaattgtcctgtga 482  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10625657 cttctttgtacaacttagcttttccttcaagatttgtgtccagtaattccattacacgtgtcaattgtcctgtga 10625731  T

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