View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2870-Insertion-3 (Length: 390)
Name: NF2870-Insertion-3
Description: NF2870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2870-Insertion-3 |
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| [»] chr6 (11 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 7 - 390
Target Start/End: Original strand, 4370315 - 4370698
Alignment:
| Q |
7 |
actctctgcgtcaaccgatccatcaaccattatggtgcaacctgttaccttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4370315 |
actctctgcgtcaaccgatccatcaaccattatggtgcaacctgttaccttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttca |
4370414 |
T |
|
| Q |
107 |
tccgtcaaatatttccctctaatctcatcataagacggtggcttaaatccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4370415 |
tccgtcaaatatttccctctaatctcatcataagacggtggcttaaatccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactct |
4370514 |
T |
|
| Q |
207 |
gtgccgctgcaaacggtatggcattgttgtagaaaaaccttgcaatcgcttgacatgcttcctctcttgatgtcttctcattcttttcatcaacaacaga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4370515 |
gtgccgctgcaaacggtatggcattgttgtagaaaaaccttgcaatcgcttgacatgcttcctctcttgatgtcttctcattcttttcatcaacaacaga |
4370614 |
T |
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| Q |
307 |
ggcttctgacccaactcgccttctcttgaaaccatctttagagcttcgaacaacaacttcatcattgccacttgttttttcgcc |
390 |
Q |
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| T |
4370615 |
ggcttctgagccaactcgccttctcttgaaaccatctttagagcttcgaacaacaacttcatcattgccacttgttttttcgcc |
4370698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 4365930 - 4366282
Alignment:
| Q |
16 |
gtcaaccgatccatcaaccattatggtgcaacctgttaccttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaa |
115 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4365930 |
gtcagccgatccatcaaccattatggtgcaacctgttactttccatatagctctatgttcctccaaagcttcatttgtcaacttaacttcatccgtcaaa |
4366029 |
T |
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| Q |
116 |
tatttccctctaatctcatcataagacggtggcttaaatccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctgtgccgctg |
215 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4366030 |
tatttccctctaatctcatcataagacggtggattaaatcctacgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctttgccgctg |
4366129 |
T |
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| Q |
216 |
caaacggtatggcattgttgtagaaaaaccttgcaatcgcttgacatgcttcctctcttgatgtcttctcattcttttcatcaacaacagaggcttctga |
315 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| ||| |
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| T |
4366130 |
taaacggtatggcattgttgtagaaaaaccttgcaatcacttgacatgcttcctctctcgaagtcttctcatttttttcatcaacaacagaggcttttga |
4366229 |
T |
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| Q |
316 |
cccaactcgccttctcttgaaaccatctttagagcttcgaacaacaacttcat |
368 |
Q |
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||||||| |||||||||| |||||||| ||||||||| |||||| ||||||| |
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| T |
4366230 |
gccaactctccttctcttgtaaccatctctagagcttccaacaaccacttcat |
4366282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 27 - 368
Target Start/End: Complemental strand, 5725366 - 5725025
Alignment:
| Q |
27 |
catcaaccattatggtgcaacctgttaccttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctct |
126 |
Q |
| |
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|||| |||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| |||| |||| ||||||||||||||||||||||||| | |
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| T |
5725366 |
catcgaccattatggtgcaacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttcccttt |
5725267 |
T |
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| Q |
127 |
aatctcatcataagacggtggcttaaatccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctgtgccgctgcaaacggtatg |
226 |
Q |
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||||||||| |||||||||||||||| ||| | || ||| ||||||||| |||| ||||||| ||||||||||||||| | |||| ||| | ||||| |
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| T |
5725266 |
aatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatg |
5725167 |
T |
|
| Q |
227 |
gcattgttgtagaaaaaccttgcaatcgcttgacatgcttcctctcttgatgtcttctcattcttttcatcaacaacagaggcttctgacccaactcgcc |
326 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||| |||||| | ||| || || || ||| | ||||| || |
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| T |
5725166 |
acattgttgtagaaaaaccttgcaatagcttgacatgcttcttctctcgaagtcttcttattcttacaactaacgacggaacctggtgagctaactctcc |
5725067 |
T |
|
| Q |
327 |
ttctcttgaaaccatctttagagcttcgaacaacaacttcat |
368 |
Q |
| |
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|||||||||||| |||| ||||||| | |||||| ||||||| |
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| T |
5725066 |
ttctcttgaaactatctctagagctaccaacaaccacttcat |
5725025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 27 - 270
Target Start/End: Original strand, 4360539 - 4360782
Alignment:
| Q |
27 |
catcaaccattatggtgcaacctgttaccttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctct |
126 |
Q |
| |
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|||| ||||||||| |||||||||| | |||||||||||||||||||||||||||| ||||||| |||||||||| ||| |||| |||||||||| || |
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| T |
4360539 |
catcgaccattatgctgcaacctgtgatcttccacatagctctatgttcttccaaaacttcattcgtcaacttaatttcttccggaaaatatttccatcc |
4360638 |
T |
|
| Q |
127 |
aatctcatcataagacggtggcttaaatccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctgtgccgctgcaaacggtatg |
226 |
Q |
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||| ||| | |||||||||||||||| |||| |||||||||||||||||| |||| || |||||||||||||| | | | | | || |||||| |
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| T |
4360639 |
aatatcaaagaaccccggtggcttaaatcctacgccatgtcttgaaaccaaatcacacattgtcttaaattcatcactttctactatttcgaagggtatg |
4360738 |
T |
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| Q |
227 |
gcattgttgtagaaaaaccttgcaatcgcttgacatgcttcctc |
270 |
Q |
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|||||||| ||||||||||||||| |||| ||||||| ||||| |
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| T |
4360739 |
gcattgttcaagaaaaaccttgcaaccgctcgacatgcctcctc |
4360782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 56 - 256
Target Start/End: Complemental strand, 4414360 - 4414159
Alignment:
| Q |
56 |
ttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccc-tctaatctcatcataagacggtggcttaaat |
154 |
Q |
| |
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||||| ||||||||||||||| |||||||||| ||||||||||||||||| |||| |||||||||||| | ||| |||||| |||| |||||| |||| |
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| T |
4414360 |
ttccatatagctctatgttctaccaaagcttcctttgtcaacttaacttcttccgccaaatatttcccttttaaggtcatcaaaagaaggtggcacaaat |
4414261 |
T |
|
| Q |
155 |
ccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctgtgccgctgcaaacggtatggcattgttgtagaaaaaccttgcaatcg |
254 |
Q |
| |
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||| || |||||||||||||| | | ||||||| |||| |||||||||| | |||| ||| ||||||| |||||||||||||||||||||||| || |
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| T |
4414260 |
cctaacccatgtcttgaaaccaactgacacatagtaataaactcatcactctttaccgcatcaagcggtatgtcattgttgtagaaaaaccttgcaaccg |
4414161 |
T |
|
| Q |
255 |
ct |
256 |
Q |
| |
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|| |
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| T |
4414160 |
ct |
4414159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 4385103 - 4385178
Alignment:
| Q |
66 |
ctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataaga |
141 |
Q |
| |
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||||||| ||||||||||||| ||| |||||||||||| ||| ||||||| |||||||||||||||||| |||| |
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| T |
4385103 |
ctctatgatcttccaaagctttattcaccaacttaacttcttccctcaaatacttccctctaatctcatcaaaaga |
4385178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 4390224 - 4390294
Alignment:
| Q |
74 |
tcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacgg |
144 |
Q |
| |
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||||||||||||||||| |||||||||||| ||| ||||||| |||||| ||||||||||| ||||||| |
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| T |
4390224 |
tcttccaaagcttcattcaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacgg |
4390294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 4385257 - 4385307
Alignment:
| Q |
220 |
cggtatggcattgttgtagaaaaaccttgcaatcgcttgacatgcttcctc |
270 |
Q |
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|||||| |||||||||||||||||||| ||||||||| |||| |||||||| |
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| T |
4385257 |
cggtattgcattgttgtagaaaaacctcgcaatcgctcgacacgcttcctc |
4385307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 4390370 - 4390420
Alignment:
| Q |
220 |
cggtatggcattgttgtagaaaaaccttgcaatcgcttgacatgcttcctc |
270 |
Q |
| |
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|||||| |||||||||||||||||||| ||||||||| |||| |||||||| |
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| T |
4390370 |
cggtattgcattgttgtagaaaaacctcgcaatcgctcgacacgcttcctc |
4390420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 4377544 - 4377611
Alignment:
| Q |
77 |
tccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacgg |
144 |
Q |
| |
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|||||||||| ||| |||||||||||| ||| ||||||| |||||| ||||||||||| ||||||| |
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| T |
4377544 |
tccaaagctttattgaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacgg |
4377611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 4377696 - 4377737
Alignment:
| Q |
229 |
attgttgtagaaaaaccttgcaatcgcttgacatgcttcctc |
270 |
Q |
| |
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|||||||||||||||||| ||||||||| |||| |||||||| |
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| T |
4377696 |
attgttgtagaaaaacctcgcaatcgctcgacacgcttcctc |
4377737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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