View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2870R-Insertion-1 (Length: 1026)
Name: NF2870R-Insertion-1
Description: NF2870R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2870R-Insertion-1 |
 | |
|
| [»] scaffold0697 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 622; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 110 - 908
Target Start/End: Complemental strand, 42492761 - 42491973
Alignment:
| Q |
110 |
tagggtgcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42492761 |
tagggtgcgtttgtttcatggatacacaatttattctcaggaattatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaa |
42492662 |
T |
|
| Q |
210 |
gtgtttggttaaatagttttgttcctgggaattttattaaaaaagaaactgggaataattgaaatgtgtttgtattgcaaaatttgttcctggaaatgaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
42492661 |
gtgtttggttaaatagttttgttcctgggaattttattaaaaaagaaactgggaataattgaaatgtgtttgtattgcaaaacttgttcctgggaatgaa |
42492562 |
T |
|
| Q |
310 |
tgatgtaattccaattttacccgtttaataagaaatagaaaaccaactaattaaacatgaactgggaaaagaaaattctactaaagaaacattcaaggaa |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
42492561 |
tgatgtaattccaattttacccgtttaataagaaatagaaaaccaactaattaaacatgaactggaataagaaaattctac-aaagaaacattcaaggaa |
42492463 |
T |
|
| Q |
410 |
atcaatcagcaagtaaccacatgtaaatgatgtcaat-cgatcctttctgcattattatttttatgcatatgctttacgaaaatggagcctagtccatgt |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42492462 |
atcaatcagcaagtaaccacatgtaaatgatgtcaatacgatcctttctgcattattatttttatgcatatgctttacgaaaatggagcctagtccatgt |
42492363 |
T |
|
| Q |
509 |
agacaataaagcaacttatacgtaacnnnnnnnnnnnnnnnnnnngggtcaagaacttatacgtactctattatttatacactggtgatgcaattgctgt |
608 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
42492362 |
agacaataaagcaacttattcgtaa--------ttatttttttttgggtcaagaacttatacgtactctattatttatacactagtgatgcaattgcatt |
42492271 |
T |
|
| Q |
609 |
tagtattagacagttttcaatcactttattgtctcattaactaacattaattcaacaatataagggatcctcatcatttcagtatcttagtatgttacga |
708 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42492270 |
tagtattagagagttttcaatcactttattgtctcattaactaacattaattcaacaatataagggatcctcatcatttcagtatcttagtatgttacga |
42492171 |
T |
|
| Q |
709 |
tggtgaaattaaagggtaataatgggttttcatttcatctcatgggtttatggttaccgggaataaagttttcccaaccccatctcatgggaataaaatt |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42492170 |
tggtgaaattaaagggtaataatgggttttcatttcatctcatgggtttatggttaccgggaataaagttttcccaaccccatctcatgggaataaaatt |
42492071 |
T |
|
| Q |
809 |
gaggagaacgtgggtaaacatgggtgnnnnnnnngttcccgggaattatttatttcctgggcttatttctttgttcctatccaccaaacaaaggcatgtt |
908 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||| |||||| |||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
42492070 |
gaggagaacgtgggtaaacatgggtg-tttttttgttcctgggaattattta-ttcctgagcttatttttttgttcctatctaccaaacaaaggcatgtt |
42491973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 112 - 834
Target Start/End: Original strand, 52364427 - 52365132
Alignment:
| Q |
112 |
gggtgcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaagt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52364427 |
gggtgcgtttgtttcatggatacacaatttattcccaggaattatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaagt |
52364526 |
T |
|
| Q |
212 |
gtttggttaaatagttttgttcctgggaattttattaaaaaagaaactgggaataattgaaatgtgtttgtattgcaaaatttgttcctggaaatgaatg |
311 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52364527 |
gtttggttaaatagttttgttcttgggaattttattaaaaaagaaactgggaataattgaaatgtgtttgtattgcaaaatttgttcctgaaaatgaatg |
52364626 |
T |
|
| Q |
312 |
atgtaattccaattttacccgtttaataagaaatagaaaaccaactaattaaacatgaactgggaaaagaaaattctactaaagaaacattcaaggaaat |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
52364627 |
atgtaattccaattttacccgtttaataagaaatagaaaaccaactaattaaacatgaactggaaaaagaaaattctac-aaagaagcattcaaggaaat |
52364725 |
T |
|
| Q |
412 |
caatcagcaagtaaccacatgtaaatgatgtcaat-cgatcctttctgcattattatttttatgcatatgctttacgaaaatggagcctagtccatgtag |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52364726 |
caatcagcaagtaaccacatgtaaatgatgtcaatccgatcctttctgcattattatttttatgcatatgctttacgaaaatggagcctagtccatgtag |
52364825 |
T |
|
| Q |
511 |
acaataaagcaacttatacgtaacnnnnnnnnnnnnnnnnnnngggtcaagaacttatacgtactctattatttatacactggtgatgcaattgctgtta |
610 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
52364826 |
acaataaagcaacttatacgtaa---------tttttttttttgggtcaagaacttatacgtactctattatttatacaccggtgatgcaattgcattta |
52364916 |
T |
|
| Q |
611 |
gtattagacagttttcaatcactttattgtctcattaactaacattaattcaacaatataagggatcctcatcatttcagtatcttagtatgttacgatg |
710 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||| |
|
|
| T |
52364917 |
gtattagagagttttcaatcactttattgactcattaactaacattaattcaacaatataagggattctcatcatttc--------agtttgttacgatg |
52365008 |
T |
|
| Q |
711 |
gtgaaattaaagggtaataatgggttttcatttcatctcatgggtttatggttaccgggaataaagttttcccaaccccatctcatgggaataaaattga |
810 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
52365009 |
gtgaaattaaagggtaataatgggttttcatttcatctcatgggtttatggttaccgggaataaagttttcccaaccccatctcataggaataaaattga |
52365108 |
T |
|
| Q |
811 |
ggagaacgtgggtaaacatgggtg |
834 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
52365109 |
ggagaacgtgggtaaacatgggtg |
52365132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 603; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 110 - 908
Target Start/End: Original strand, 9935417 - 9936203
Alignment:
| Q |
110 |
tagggtgcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaa |
209 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9935417 |
tagggtgcgtttgttttatggatacacaatttattcctaggaattatctttccctgaaatataaaggtgtgatttttattcttaggaaaatatgaaaaaa |
9935516 |
T |
|
| Q |
210 |
gtgtttggttaaatagttttgttcctgggaattttattaaaaaagaaactgggaataattgaaatgtgtttgtattgcaaaatttgttcctggaaatgaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
9935517 |
gtgtttggttaaatagttttgttcctgggaattttattaaaaaagaaactgggaataattgaaatgtgtttgtattgcaaaacttgttcctgggaatgaa |
9935616 |
T |
|
| Q |
310 |
tgatgtaattccaattttacccgtttaataagaaatagaaaaccaactaattaaacatgaactgggaaaagaaaattctactaaagaaacattcaaggaa |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
9935617 |
tgatgtaattccaattttacccgtttaataagaaatagaaaaccaactaattaaacatgaactggaataagaaaattctac-aaagaaacattcaaggaa |
9935715 |
T |
|
| Q |
410 |
atcaatcagcaagtaaccacatgtaaatgatgtcaat-cgatcctttctgcattattatttttatgcatatgctttacgaaaatggagcctagtccatgt |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9935716 |
atcaatcagcaagtaaccacatgtaaatgatgtcaatacgatcctttctgcattattatttttatgcatatgctttacgaaaatggagcctagtccatgt |
9935815 |
T |
|
| Q |
509 |
agacaataaagcaacttatacgtaacnnnnnnnnnnnnnnnnnnngggtcaagaacttatacgtactctattatttatacactggtgatgcaattgctgt |
608 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
9935816 |
agacaataaagcaacttattcgtaa---------tttttttttttgggtcaagaacttatacgtactctattatttatacactagtgatgcaattgcatt |
9935906 |
T |
|
| Q |
609 |
tagtattagacagttttcaatcactttattgtctcattaactaacattaattcaacaatataagggatcctcatcatttcagtatcttagtatgttacga |
708 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9935907 |
tagtattagagagttttcaatcactttattgtctcattaactaacattaattcaacaatataagggatcctcatcatttcagtatcttagtatgttacga |
9936006 |
T |
|
| Q |
709 |
tggtgaaattaaagggtaataatgggttttcatttcatctcatgggtttatggttaccgggaataaagttttcccaaccccatctcatgggaataaaatt |
808 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9936007 |
tggtgaaattaaagggtaatcatgggttttcatttcatctcatgggtttatggttaccgggaataaagttttcccaaccccatctcatgggaataaaatt |
9936106 |
T |
|
| Q |
809 |
gaggagaacgtgggtaaacatgggtgnnnnnnnngttcccgggaattatttatttcctgggcttatttctttgttcctatccaccaaacaaaggcatgtt |
908 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||| |||||| |||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
9936107 |
gaggagaacgtgggtaaacatgggtgttttttt--ttcctgggaattattta-ttcctgagcttatttttttgttcctatctaccaaacaaaggcatgtt |
9936203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 110 - 908
Target Start/End: Complemental strand, 6696865 - 6696081
Alignment:
| Q |
110 |
tagggtgcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6696865 |
tagggtgcgtttgtttcatggatacacaatttattcctaggaattatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaa |
6696766 |
T |
|
| Q |
210 |
gtgtttggttaaatagttttgttcctgggaattttattaaaaaagaaactgggaataattgaaatgtgtttgtattgcaaaatttgttcctggaaatgaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
6696765 |
gtgtttggttaaatagttttgttcctgggaattttattaaaaaagaaactgggaataattgaaatgtgtttgtattgcaaaacttgttcctgggaatgaa |
6696666 |
T |
|
| Q |
310 |
tgatgtaattccaattttacccgtttaataagaaatagaaaaccaactaattaaacatgaactgggaaaagaaaattctactaaagaaacattcaaggaa |
409 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
6696665 |
tgatgtaattccaa---tacccgtttaataagaaatagaaaaccaactaattaaacatgaactggaataagaaaattctac-aaagaaacattcaaggaa |
6696570 |
T |
|
| Q |
410 |
atcaatcagcaagtaaccacatgtaaatgatgtcaat-cgatcctttctgcattattatttttatgcatatgctttacgaaaatggagcctagtccatgt |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6696569 |
atcaatcagcaagtaaccacatgtaaatgatgtcaatacgatcctttctgcattattatttttatgcatatgctttacgaaaatggagcctagtccatgt |
6696470 |
T |
|
| Q |
509 |
agacaataaagcaacttatacgtaacnnnnnnnnnnnnnnnnnnngggtcaagaacttatacgtactctattatttatacactggtgatgcaattgctgt |
608 |
Q |
| |
|
|||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||| | |
|
|
| T |
6696469 |
agacaataaaacaacttattcgtaa---------tttttttttttgggtcaagaacttatacgtactctattatttatacagtagtgatgcaattgcatt |
6696379 |
T |
|
| Q |
609 |
tagtattagacagttttcaatcactttattgtctcattaactaacattaattcaacaatataagggatcctcatcatttcagtatcttagtatgttacga |
708 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6696378 |
tagtattagagagttttcaatcactttattgtctcattaactaacattaattcaacaatataagggatcctcatcatttcagtatcttagtatgttacga |
6696279 |
T |
|
| Q |
709 |
tggtgaaattaaagggtaataatgggttttcatttcatctcatgggtttatggttaccgggaataaagttttcccaaccccatctcatgggaataaaatt |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6696278 |
tggtgaaattaaagggtaataatgggttttcatttcatctcatgggtttatggttaccgggaataaagttttcccaaccccatctcatgggaataaaatt |
6696179 |
T |
|
| Q |
809 |
gaggagaacgtgggtaaacatgggtgnnnnnnnngttcccgggaattatttatttcctgggcttatttctttgttcctatccaccaaacaaaggcatgtt |
908 |
Q |
| |
|
|||||||||||||||||||||| || |||| | ||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
6696178 |
gaggagaacgtgggtaaacatgagt-tttttttttttcctgaaaattattta-ttcctgggcttatttttttgttcctatctaccaaacaaaggcatgtt |
6696081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 5665710 - 5665800
Alignment:
| Q |
132 |
tacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaata-tgaaaaaagtgtttggttaa |
221 |
Q |
| |
|
|||| ||||||||||||||||| | ||| ||| ||||| |||||| | ||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
5665710 |
tacaaaatttattcccaggaattaacttacccaggaatgtaaaggggaaatttttattcccaggaaaatacagaaaaaagtgtttggttaa |
5665800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 561; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 110 - 908
Target Start/End: Complemental strand, 39346065 - 39345283
Alignment:
| Q |
110 |
tagggtgcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39346065 |
tagggtgcgtttgtttcatggatacacaatttattcccaggaattatctttttctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaa |
39345966 |
T |
|
| Q |
210 |
gtgtttggttaaatagttttgttcctgggaattttattaaaaaagaaactgggaataattgaaatgtgtttgtattgcaaaatttgttcctggaaatgaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39345965 |
gtgtttggttaaatagttttgttcctgggaattttattaaaaaagaaactgagaataattgaaatgtgtttgtattgcaaaatttgttcctgaaaatgaa |
39345866 |
T |
|
| Q |
310 |
tgatgtaattccaattttacccgtttaataagaaatagaaaaccaactaattaaacatgaactgggaaaagaaaattctactaaagaaacattcaaggaa |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||| |
|
|
| T |
39345865 |
tgatgtaattccaattttacccgtttaataagaaatagaaaaccaactaattaaacatgaactggaaaaagaaaattctac-aaagaagcattcaaggaa |
39345767 |
T |
|
| Q |
410 |
atcaatcagcaagtaaccacatgtaaatgatgtcaat-cgatcctttctgcattattatttttatgcatatgctttacgaaaatggagcctagtccatgt |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39345766 |
atcaatcagcaagtaaccacatgtaaatgatgtcaatccgatcctttctgcattgttatttttatgcatatgctttacgaaaatggagtctagtccatgt |
39345667 |
T |
|
| Q |
509 |
agacaataaagcaacttatacgtaacnnnnnnnnnnnnnnnnnnngggtcaagaacttatacgtactctattatttatacactggtgatgcaattgctgt |
608 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39345666 |
agacaataaagcaacttatacgtaa------ttttttttttttttgggtcaagaacttatacgtactctattatttatacactggtgatgcaattgcatt |
39345573 |
T |
|
| Q |
609 |
tagtattagacagttttcaatcactttattgtctcattaactaacattaattcaacaatataagggatcctcatcatttcagtatcttagtatgttacga |
708 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
39345572 |
tagtattagagagttttcaatcactttattgactcattaactaacattaattcaacaatataagggatcctcatcatttc--------agtttgttacga |
39345481 |
T |
|
| Q |
709 |
tggtgaaattaaagggtaataatgggttttcatttcatctcatgggtttatggttaccgggaataaagttttcccaaccccatctcatgggaataaaatt |
808 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39345480 |
tggtgaaataaaagggtaataatggattttcatttcatctcatgggtttatggttaccgggaataaagttttcccaaccccatctcatgggaataaaatt |
39345381 |
T |
|
| Q |
809 |
gaggagaacgtgggtaaacatgggtgnnnnnnnngttcccgggaattatttatttcctgggcttatttctttgttcctatccaccaaacaaaggcatgtt |
908 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||||||||| ||||||||||||||| ||||||| |||| ||||||||||| |||||| |
|
|
| T |
39345380 |
gaggagaacgtgggtaaacatgggcg-tttttttgttcctaggaattattta-ttcctgggcttatttttttgttcttatctaccaaacaaagacatgtt |
39345283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 22908246 - 22908135
Alignment:
| Q |
111 |
agggtgcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatat-gaaaaaa |
209 |
Q |
| |
|
|||| |||||||||| | || |||| |||||||||||||| |||| |||||| ||||| | ||||| | ||||||||| |||||||||| ||||||| |
|
|
| T |
22908246 |
agggggcgtttgtttgagggttacaaaatttattcccaggtatcaactttcctaggaatgtgaaggttaaaattttattcccaggaaaatatagaaaaaa |
22908147 |
T |
|
| Q |
210 |
gtgtttggttaa |
221 |
Q |
| |
|
||||||| |||| |
|
|
| T |
22908146 |
gtgtttgattaa |
22908135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 220
Target Start/End: Original strand, 6911207 - 6911316
Alignment:
| Q |
110 |
tagggtgcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaa |
209 |
Q |
| |
|
||||||| |||||||||| | ||| |||||||||| |||||| | | |||| |||||||||||| || || ||||||||| ||||| ||||||||| |
|
|
| T |
6911207 |
tagggtgtgtttgtttcaagtttaccaaatttattcctaggaataa-cattccttggaatataaagatgggaattttattccaaggaatttatgaaaaat |
6911305 |
T |
|
| Q |
210 |
gtgtttggtta |
220 |
Q |
| |
|
|||||||||| |
|
|
| T |
6911306 |
atgtttggtta |
6911316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 21529753 - 21529859
Alignment:
| Q |
116 |
gcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatat-gaaaaaagtgtt |
214 |
Q |
| |
|
|||||||||| | || |||| ||| ||||| |||| |||| ||||||| ||||| | ||||| | ||||||||| || ||||||| |||||||||||| |
|
|
| T |
21529753 |
gcgtttgtttgagggttacaaaatctattctcaggtatcaactttcccaggaatgtgaaggttaaaattttattcccagaaaaatatagaaaaaagtgtt |
21529852 |
T |
|
| Q |
215 |
tggttaa |
221 |
Q |
| |
|
||||||| |
|
|
| T |
21529853 |
tggttaa |
21529859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 5e-68; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 184 - 323
Target Start/End: Original strand, 9972979 - 9973118
Alignment:
| Q |
184 |
tttattcctaggaaaatatgaaaaaagtgtttggttaaatagttttgttcctgggaattttattaaaaaagaaactgggaataattgaaatgtgtttgta |
283 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9972979 |
tttattcctagaaaaatatgaaaaaagtgtttggttaaatagttttgttcctgggaattttattaaaaaagaaactgggaataattgaaatgtgtttgta |
9973078 |
T |
|
| Q |
284 |
ttgcaaaatttgttcctggaaatgaatgatgtaattccaa |
323 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9973079 |
ttgcaaaatttgttcctggagatgaatgatgtaattccaa |
9973118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 118 - 221
Target Start/End: Original strand, 13323823 - 13323927
Alignment:
| Q |
118 |
gtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaata-tgaaaaaagtgtttg |
216 |
Q |
| |
|
|||||||| | || |||| ||||||||||||||||| | ||| ||| ||||| |||||| | ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13323823 |
gtttgtttgagggttacaaaatttattcccaggaattaacttacccaggaatgtaaaggggaaatttttattcctaggaaaatacagaaaaaagtgtttg |
13323922 |
T |
|
| Q |
217 |
gttaa |
221 |
Q |
| |
|
||||| |
|
|
| T |
13323923 |
gttaa |
13323927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 9972950 - 9972986
Alignment:
| Q |
110 |
tagggtgcgtttgtttcatggatacacaatttattcc |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9972950 |
tagggtgcgtttgtttcatggatacacaatttattcc |
9972986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 33378556 - 33378664
Alignment:
| Q |
111 |
agggtgcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaag |
210 |
Q |
| |
|
|||||| |||||||||| | ||| |||||||||| |||||| | | |||| |||||||||||| || || ||||||||| ||||| ||||||||| |
|
|
| T |
33378556 |
agggtgtgtttgtttcaagtttaccaaatttattcctaggaataa-cattccttggaatataaagatgggaattttattccaaggaatttatgaaaaata |
33378654 |
T |
|
| Q |
211 |
tgtttggtta |
220 |
Q |
| |
|
|||||||||| |
|
|
| T |
33378655 |
tgtttggtta |
33378664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 2e-52; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 578 - 722
Target Start/End: Original strand, 21936339 - 21936483
Alignment:
| Q |
578 |
attatttatacactggtgatgcaattgctgttagtattagacagttttcaatcactttattgtctcattaactaacattaattcaacaatataagggatc |
677 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
21936339 |
attatttatatactggtgatgcaattgcatttagtattagagagttttcaatcactttattgtctcattaactaaccataattcaacaatataa-ggatc |
21936437 |
T |
|
| Q |
678 |
ctcatcatttcagtatcttag-tatgttacgatggtgaaattaaag |
722 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21936438 |
ctcatcatttcagtatcttagttatgttacgatggtgaaattaaag |
21936483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 332 - 533
Target Start/End: Original strand, 21935843 - 21936034
Alignment:
| Q |
332 |
gtttaataagaaatagaaaaccaactaattaaacatgaactgggaaaagaaaattctactaaagaaacattcaaggaaatcaatcagcaagtaaccacat |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21935843 |
gtttaataagaaatagaaaaccaactaattaaacatgaa-tcggaaaa--------------agaaacattca--gaaatcaatcagcaagtaaccacat |
21935925 |
T |
|
| Q |
432 |
gtaaatgatgtcaatc-------gatcctttctgcattattatttttatgcatatgctttacgaaaatggagcctagtccatgtagacaataaagcaact |
524 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
21935926 |
gtaaatgatgtcaatccgaatccgatcctttctgcattattatttttatgcatatgctttacgaaaatggagcgtagttcatgtagacaataaagcaact |
21936025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 21935703 - 21935811
Alignment:
| Q |
133 |
acacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaagtgtttggttaaatagttttgtt |
232 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21935703 |
acacaatttattctcaggaattatctttccctgaaatataaaggtgtgatttttatttctagaaaaatatgaaaaaagtgtttggttaaatagttttgtt |
21935802 |
T |
|
| Q |
233 |
cctgggaat |
241 |
Q |
| |
|
||||||||| |
|
|
| T |
21935803 |
cctgggaat |
21935811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 296
Target Start/End: Original strand, 21935804 - 21935842
Alignment:
| Q |
258 |
ctgggaataattgaaatgtgtttgtattgcaaaatttgt |
296 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21935804 |
ctgggaataattgaaatgtgtttggattgcaaaatttgt |
21935842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 554 - 586
Target Start/End: Original strand, 21936048 - 21936080
Alignment:
| Q |
554 |
gggtcaagaacttatacgtactctattatttat |
586 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
21936048 |
gggtcaagaacttatacgtactctattatttat |
21936080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 3e-26; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 1954480 - 1954541
Alignment:
| Q |
9 |
aatagcccataaaaatttacaaaattttgaagataaatgccacaaaaataagagtggtgtta |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1954480 |
aatagcccataaaaatttacaaaattttgaagataaatgccacaaaaataagagtggtgtta |
1954541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 2026951 - 2026891
Alignment:
| Q |
9 |
aatagcccataaaaatttacaaaattttgaagataaatgccacaaaaataagagtggtgtt |
69 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2026951 |
aatagcccataaaaatttacaaaattttgtagataaatgccacaaaaataagagtggtgtt |
2026891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 1958286 - 1958332
Alignment:
| Q |
63 |
tggtgttatataactcgagagacaatcttacaaatagatcacgaaca |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1958286 |
tggtcttatataactcgagagacaatcttacaaatagatcacgaaca |
1958332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 10644289 - 10644178
Alignment:
| Q |
111 |
agggtgcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatat-gaaaaaa |
209 |
Q |
| |
|
|||| |||||||||| | || |||| ||| |||||||||| |||| |||| || ||||||| ||||| | ||||||||| |||||||||| ||||||| |
|
|
| T |
10644289 |
agggggcgtttgtttgagggttacaaaatctattcccaggtatcaacttttccaggaatatgaaggttaaaattttattcccaggaaaatatagaaaaaa |
10644190 |
T |
|
| Q |
210 |
gtgtttggttaa |
221 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10644189 |
gtgtttggttaa |
10644178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 17506909 - 17507015
Alignment:
| Q |
116 |
gcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatat-gaaaaaagtgtt |
214 |
Q |
| |
|
|||||||||| | || |||| ||| |||||||||| |||| ||||||| ||||| | ||||| | ||||||||| || ||||||| |||||||||||| |
|
|
| T |
17506909 |
gcgtttgtttgagggttacaaaatctattcccaggtatcaactttcccaggaatgtgaaggttaaaattttattcccagaaaaatatagaaaaaagtgtt |
17507008 |
T |
|
| Q |
215 |
tggttaa |
221 |
Q |
| |
|
||||||| |
|
|
| T |
17507009 |
tggttaa |
17507015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 220
Target Start/End: Complemental strand, 32661284 - 32661175
Alignment:
| Q |
110 |
tagggtgcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaa |
209 |
Q |
| |
|
||||||| |||||||||| | ||| |||||||||| |||||| | | |||| |||||||||||| || || ||||||||| ||||| ||||||||| |
|
|
| T |
32661284 |
tagggtgtgtttgtttcaagtttactaaatttattcctaggaataa-cattccttggaatataaagatgggaattttattccaaggaatttatgaaaaat |
32661186 |
T |
|
| Q |
210 |
gtgtttggtta |
220 |
Q |
| |
|
|||||||||| |
|
|
| T |
32661185 |
atgtttggtta |
32661175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 21506257 - 21506151
Alignment:
| Q |
116 |
gcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatat-gaaaaaagtgtt |
214 |
Q |
| |
|
|||||||||| | || |||| ||| ||||||||| |||| |||| || ||||| | ||||| | |||||||||||||||||||| |||||||||||| |
|
|
| T |
21506257 |
gcgtttgtttgagggttacaaaatcgattcccaggtatcaacttttccaggaatgtgaaggttaaaattttattcctaggaaaatatagaaaaaagtgtt |
21506158 |
T |
|
| Q |
215 |
tggttaa |
221 |
Q |
| |
|
||||||| |
|
|
| T |
21506157 |
tggttaa |
21506151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0697
Description:
Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 710 - 815
Alignment:
| Q |
116 |
gcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaagtgttt |
215 |
Q |
| |
|
|||||||||| | || |||| ||| ||||| |||| |||| ||||||| ||||| | ||||| | ||||||||| || ||||||| ||||||||||| |
|
|
| T |
710 |
gcgtttgtttgagggttacaaaatctattctcaggtatcaactttcccaggaatgtgaaggttaaaattttattcccagaaaaatatagaaaaagtgttt |
809 |
T |
|
| Q |
216 |
ggttaa |
221 |
Q |
| |
|
|||||| |
|
|
| T |
810 |
ggttaa |
815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 27426979 - 27426914
Alignment:
| Q |
157 |
ctttccctggaatataaaggtgtgatttttattcctaggaaaatat-gaaaaaagtgtttggttaa |
221 |
Q |
| |
|
||||||||||||| | ||||| | ||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
27426979 |
ctttccctggaatgtgaaggttaaaattttattccgaggaaaatatagaaaaaagtgtttggttaa |
27426914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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