View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2870R-Insertion-5 (Length: 639)
Name: NF2870R-Insertion-5
Description: NF2870R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2870R-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 2e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 50439462 - 50439162
Alignment:
| Q |
9 |
ggaatcccaaccaagtttaatgtagatgaagctcatagaaaaatgaatggcttttcagcttgtggagatttgcttagagactaccaatgtagtct----- |
103 |
Q |
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| T |
50439462 |
ggaatcccaaccaagtttaatgtagatgaagctcatagaaaaatgaatggcttttcagcttgtggagatttgcttagagactaccaatgtagtcttatac |
50439363 |
T |
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| Q |
104 |
--------tattgtaatcttgctcgc-aaccattctcagtgtgctgagatgtaaagtttagttcatgccatgtgtattgctcgcaatcttcaccttg--- |
191 |
Q |
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| T |
50439362 |
agggtttctattgtaatcttgctcgcaaaccattctcagtgtgctgagatgtaaagtttagttcatgccatgtgtattgctcacaatcttcaccttgatc |
50439263 |
T |
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| Q |
192 |
----------------agattctaccctaattgcaactgtttttaatcaatcaacctcaatctcttatctcaaatctctcttgaaagatgttcttaatgt |
275 |
Q |
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| T |
50439262 |
atgtcgttttttagacagattctactctaattgcaactgtttttaatcaatcagcctcaatctcttatctcaaatttctcttgaaagatgttcttaatgt |
50439163 |
T |
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| Q |
276 |
c |
276 |
Q |
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| T |
50439162 |
c |
50439162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 461 - 624
Target Start/End: Complemental strand, 50438920 - 50438757
Alignment:
| Q |
461 |
tatccctcttaatattattnnnnnnngagagaaggaatatgagtgcttgatttaacgaataaagttacatgcactaatttgtacaccatatgctaatttc |
560 |
Q |
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| T |
50438920 |
tatccctcttaatattattaaaaaaatagagaaggaatatgagtgcttgatttaacgaataaagttacatgcactaatttgtacaccatatgctaatttc |
50438821 |
T |
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| Q |
561 |
gtgttctagatttacggaaagaaaactttgcactaaattacacatcgagcctcaaagatacttg |
624 |
Q |
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| T |
50438820 |
gtgttctagatttacggaaagaaaactttgcactaaattacacatcgagcctcaaagatacttg |
50438757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 285 - 471
Target Start/End: Complemental strand, 50439112 - 50438940
Alignment:
| Q |
285 |
ctattcctacgcagacttattagctaaaaacaaattttcttcttcttacaattgcttaaaaaaggatttcatggttttttcttcccggtttttattaatt |
384 |
Q |
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| T |
50439112 |
ctatttctacgcagacttattagctaaaaacaaattttcttcttcttacaattgcttaaaaaaggatttcatggttttt--------------attaatt |
50439027 |
T |
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| Q |
385 |
caaaatgtatttttcttcaagctatttcggtgttggattgtaagggtgttcccaccaccggtttagttgatcaacttatccctctta |
471 |
Q |
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| T |
50439026 |
caaaatgtatttttcttcaagctatctcggtgttggattgtaagggtgttcccaccaccggtttagttgatcaacttatccctctta |
50438940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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