View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2870R-Insertion-6 (Length: 585)
Name: NF2870R-Insertion-6
Description: NF2870R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2870R-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 7 - 582
Target Start/End: Complemental strand, 39139001 - 39138426
Alignment:
| Q |
7 |
caagtaaaacaatcgaatgtatatatatccactcaatctctgaaacgttcagattgatgctgaagaagagttcacggatgttgatgagaatgttgatgaa |
106 |
Q |
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| T |
39139001 |
caagtaaaacaatcgaatgtatatatattcactcaatctctgaaacgttcagattgatgctgaagaagagttcacggatgttgatgagaatgttgatgaa |
39138902 |
T |
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| Q |
107 |
catctcaatgaagatgaagaggctgatgaaactagtagcattgatggagaggaggatgtgaacattgagacattaacggaagaaaaagaagactattctg |
206 |
Q |
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| T |
39138901 |
catctcaatgaagatgaagaggctgatgaaactagtagcattgatggagaggaggatgtgaacattgagacattaacggaagaaaaagaagactattctg |
39138802 |
T |
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| Q |
207 |
atggttggttgtacgaggaagataccgtgcttaacgaaggcgatttttgtttgccttcatctgcggctgaccaacaaattgagtcctctaatagagacaa |
306 |
Q |
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| T |
39138801 |
atggttggttgtacgaggaagataccgtgcttaacgaaggcgatttttgtttgccttcatctgcggctgaccaacaaattgagtcctctaataaagacaa |
39138702 |
T |
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| Q |
307 |
tagtgtggaaaatgccggcgcgatgttaccttctagtccacatgtgaaaacatctgccatcacaggagtcggtttgcaagagttgatggaactaatagat |
406 |
Q |
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| T |
39138701 |
tagtgtggaaaatgccggcgcgatgttaccgtctagtccacatgtgaaaacatctgccatcacaggagtcggtttgcaagagttgatggaactaatagat |
39138602 |
T |
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| Q |
407 |
gagaaattgagtagtcaggatgagaaattgaagggtgcacaagtggtcgaaagaaatttgtttgatagaaaatggaggccctcacatacacaagattcta |
506 |
Q |
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| T |
39138601 |
gagaaattgagtagtcaggatgagaaattgaagggtgcacaagtggtcgaaagaaatttgtttgatagaaaatggaggccctcacatacacaagattcta |
39138502 |
T |
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| Q |
507 |
gcattgtagtagaaaattagcttgttttgttgtgtgcgttggtcgaaannnnnnngctacatctttatcttgttaa |
582 |
Q |
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| T |
39138501 |
gcattgtagtagaaaattagcttgttttgttgtgtgcgttggtcgtaatttttttgctacatctttatcttgttaa |
39138426 |
T |
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