View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2870_high_1 (Length: 868)
Name: NF2870_high_1
Description: NF2870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2870_high_1 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] scaffold0697 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 104 - 525
Target Start/End: Original strand, 52364427 - 52364848
Alignment:
| Q |
104 |
gggtgcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaagt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52364427 |
gggtgcgtttgtttcatggatacacaatttattcccaggaattatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaagt |
52364526 |
T |
|
| Q |
204 |
gtttggttaaatagttttgttcctgggaattttattaaaaaagaaactgggaataattgaaatgtgtttgtattgcaaaatttgttcctggaaatgaatg |
303 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52364527 |
gtttggttaaatagttttgttcttgggaattttattaaaaaagaaactgggaataattgaaatgtgtttgtattgcaaaatttgttcctgaaaatgaatg |
52364626 |
T |
|
| Q |
304 |
atgtaattccaattttacccgtttaataagaaatagaaaaccaactaattaaacatgaactgggaaaagaaaattctactaaagaaacattcaaggaaat |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
52364627 |
atgtaattccaattttacccgtttaataagaaatagaaaaccaactaattaaacatgaactggaaaaagaaaattctac-aaagaagcattcaaggaaat |
52364725 |
T |
|
| Q |
404 |
caatcagcaagtaaccacatgtaaatgatgtcaat-cgatcctttctgcattattatttttatgcatatgctttacgaaaatggagcctagtccatgtag |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52364726 |
caatcagcaagtaaccacatgtaaatgatgtcaatccgatcctttctgcattattatttttatgcatatgctttacgaaaatggagcctagtccatgtag |
52364825 |
T |
|
| Q |
503 |
acaataaagcaacttatacgtaa |
525 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
52364826 |
acaataaagcaacttatacgtaa |
52364848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 102 - 525
Target Start/End: Complemental strand, 42492761 - 42492338
Alignment:
| Q |
102 |
tagggtgcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42492761 |
tagggtgcgtttgtttcatggatacacaatttattctcaggaattatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaa |
42492662 |
T |
|
| Q |
202 |
gtgtttggttaaatagttttgttcctgggaattttattaaaaaagaaactgggaataattgaaatgtgtttgtattgcaaaatttgttcctggaaatgaa |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
42492661 |
gtgtttggttaaatagttttgttcctgggaattttattaaaaaagaaactgggaataattgaaatgtgtttgtattgcaaaacttgttcctgggaatgaa |
42492562 |
T |
|
| Q |
302 |
tgatgtaattccaattttacccgtttaataagaaatagaaaaccaactaattaaacatgaactgggaaaagaaaattctactaaagaaacattcaaggaa |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
42492561 |
tgatgtaattccaattttacccgtttaataagaaatagaaaaccaactaattaaacatgaactggaataagaaaattctac-aaagaaacattcaaggaa |
42492463 |
T |
|
| Q |
402 |
atcaatcagcaagtaaccacatgtaaatgatgtcaat-cgatcctttctgcattattatttttatgcatatgctttacgaaaatggagcctagtccatgt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42492462 |
atcaatcagcaagtaaccacatgtaaatgatgtcaatacgatcctttctgcattattatttttatgcatatgctttacgaaaatggagcctagtccatgt |
42492363 |
T |
|
| Q |
501 |
agacaataaagcaacttatacgtaa |
525 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
42492362 |
agacaataaagcaacttattcgtaa |
42492338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 546 - 583
Target Start/End: Complemental strand, 42492325 - 42492288
Alignment:
| Q |
546 |
gggtcaagaacttatacgtactctattatttatacact |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42492325 |
gggtcaagaacttatacgtactctattatttatacact |
42492288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 546 - 582
Target Start/End: Original strand, 52364860 - 52364896
Alignment:
| Q |
546 |
gggtcaagaacttatacgtactctattatttatacac |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52364860 |
gggtcaagaacttatacgtactctattatttatacac |
52364896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 102 - 525
Target Start/End: Complemental strand, 39346065 - 39345642
Alignment:
| Q |
102 |
tagggtgcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39346065 |
tagggtgcgtttgtttcatggatacacaatttattcccaggaattatctttttctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaa |
39345966 |
T |
|
| Q |
202 |
gtgtttggttaaatagttttgttcctgggaattttattaaaaaagaaactgggaataattgaaatgtgtttgtattgcaaaatttgttcctggaaatgaa |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39345965 |
gtgtttggttaaatagttttgttcctgggaattttattaaaaaagaaactgagaataattgaaatgtgtttgtattgcaaaatttgttcctgaaaatgaa |
39345866 |
T |
|
| Q |
302 |
tgatgtaattccaattttacccgtttaataagaaatagaaaaccaactaattaaacatgaactgggaaaagaaaattctactaaagaaacattcaaggaa |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||| |
|
|
| T |
39345865 |
tgatgtaattccaattttacccgtttaataagaaatagaaaaccaactaattaaacatgaactggaaaaagaaaattctac-aaagaagcattcaaggaa |
39345767 |
T |
|
| Q |
402 |
atcaatcagcaagtaaccacatgtaaatgatgtcaat-cgatcctttctgcattattatttttatgcatatgctttacgaaaatggagcctagtccatgt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39345766 |
atcaatcagcaagtaaccacatgtaaatgatgtcaatccgatcctttctgcattgttatttttatgcatatgctttacgaaaatggagtctagtccatgt |
39345667 |
T |
|
| Q |
501 |
agacaataaagcaacttatacgtaa |
525 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
39345666 |
agacaataaagcaacttatacgtaa |
39345642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 546 - 584
Target Start/End: Complemental strand, 39345627 - 39345589
Alignment:
| Q |
546 |
gggtcaagaacttatacgtactctattatttatacactg |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39345627 |
gggtcaagaacttatacgtactctattatttatacactg |
39345589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 22908246 - 22908135
Alignment:
| Q |
103 |
agggtgcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatat-gaaaaaa |
201 |
Q |
| |
|
|||| |||||||||| | || |||| |||||||||||||| |||| |||||| ||||| | ||||| | ||||||||| |||||||||| ||||||| |
|
|
| T |
22908246 |
agggggcgtttgtttgagggttacaaaatttattcccaggtatcaactttcctaggaatgtgaaggttaaaattttattcccaggaaaatatagaaaaaa |
22908147 |
T |
|
| Q |
202 |
gtgtttggttaa |
213 |
Q |
| |
|
||||||| |||| |
|
|
| T |
22908146 |
gtgtttgattaa |
22908135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 212
Target Start/End: Original strand, 6911207 - 6911316
Alignment:
| Q |
102 |
tagggtgcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaa |
201 |
Q |
| |
|
||||||| |||||||||| | ||| |||||||||| |||||| | | |||| |||||||||||| || || ||||||||| ||||| ||||||||| |
|
|
| T |
6911207 |
tagggtgtgtttgtttcaagtttaccaaatttattcctaggaataa-cattccttggaatataaagatgggaattttattccaaggaatttatgaaaaat |
6911305 |
T |
|
| Q |
202 |
gtgtttggtta |
212 |
Q |
| |
|
|||||||||| |
|
|
| T |
6911306 |
atgtttggtta |
6911316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 21529753 - 21529859
Alignment:
| Q |
108 |
gcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatat-gaaaaaagtgtt |
206 |
Q |
| |
|
|||||||||| | || |||| ||| ||||| |||| |||| ||||||| ||||| | ||||| | ||||||||| || ||||||| |||||||||||| |
|
|
| T |
21529753 |
gcgtttgtttgagggttacaaaatctattctcaggtatcaactttcccaggaatgtgaaggttaaaattttattcccagaaaaatatagaaaaaagtgtt |
21529852 |
T |
|
| Q |
207 |
tggttaa |
213 |
Q |
| |
|
||||||| |
|
|
| T |
21529853 |
tggttaa |
21529859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 102 - 525
Target Start/End: Original strand, 9935417 - 9935840
Alignment:
| Q |
102 |
tagggtgcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaa |
201 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9935417 |
tagggtgcgtttgttttatggatacacaatttattcctaggaattatctttccctgaaatataaaggtgtgatttttattcttaggaaaatatgaaaaaa |
9935516 |
T |
|
| Q |
202 |
gtgtttggttaaatagttttgttcctgggaattttattaaaaaagaaactgggaataattgaaatgtgtttgtattgcaaaatttgttcctggaaatgaa |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
9935517 |
gtgtttggttaaatagttttgttcctgggaattttattaaaaaagaaactgggaataattgaaatgtgtttgtattgcaaaacttgttcctgggaatgaa |
9935616 |
T |
|
| Q |
302 |
tgatgtaattccaattttacccgtttaataagaaatagaaaaccaactaattaaacatgaactgggaaaagaaaattctactaaagaaacattcaaggaa |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
9935617 |
tgatgtaattccaattttacccgtttaataagaaatagaaaaccaactaattaaacatgaactggaataagaaaattctac-aaagaaacattcaaggaa |
9935715 |
T |
|
| Q |
402 |
atcaatcagcaagtaaccacatgtaaatgatgtcaat-cgatcctttctgcattattatttttatgcatatgctttacgaaaatggagcctagtccatgt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9935716 |
atcaatcagcaagtaaccacatgtaaatgatgtcaatacgatcctttctgcattattatttttatgcatatgctttacgaaaatggagcctagtccatgt |
9935815 |
T |
|
| Q |
501 |
agacaataaagcaacttatacgtaa |
525 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
9935816 |
agacaataaagcaacttattcgtaa |
9935840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 102 - 525
Target Start/End: Complemental strand, 6696865 - 6696445
Alignment:
| Q |
102 |
tagggtgcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6696865 |
tagggtgcgtttgtttcatggatacacaatttattcctaggaattatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaa |
6696766 |
T |
|
| Q |
202 |
gtgtttggttaaatagttttgttcctgggaattttattaaaaaagaaactgggaataattgaaatgtgtttgtattgcaaaatttgttcctggaaatgaa |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
6696765 |
gtgtttggttaaatagttttgttcctgggaattttattaaaaaagaaactgggaataattgaaatgtgtttgtattgcaaaacttgttcctgggaatgaa |
6696666 |
T |
|
| Q |
302 |
tgatgtaattccaattttacccgtttaataagaaatagaaaaccaactaattaaacatgaactgggaaaagaaaattctactaaagaaacattcaaggaa |
401 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
6696665 |
tgatgtaattccaa---tacccgtttaataagaaatagaaaaccaactaattaaacatgaactggaataagaaaattctac-aaagaaacattcaaggaa |
6696570 |
T |
|
| Q |
402 |
atcaatcagcaagtaaccacatgtaaatgatgtcaat-cgatcctttctgcattattatttttatgcatatgctttacgaaaatggagcctagtccatgt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6696569 |
atcaatcagcaagtaaccacatgtaaatgatgtcaatacgatcctttctgcattattatttttatgcatatgctttacgaaaatggagcctagtccatgt |
6696470 |
T |
|
| Q |
501 |
agacaataaagcaacttatacgtaa |
525 |
Q |
| |
|
|||||||||| |||||||| ||||| |
|
|
| T |
6696469 |
agacaataaaacaacttattcgtaa |
6696445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 213
Target Start/End: Original strand, 5665710 - 5665800
Alignment:
| Q |
124 |
tacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaata-tgaaaaaagtgtttggttaa |
213 |
Q |
| |
|
|||| ||||||||||||||||| | ||| ||| ||||| |||||| | ||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
5665710 |
tacaaaatttattcccaggaattaacttacccaggaatgtaaaggggaaatttttattcccaggaaaatacagaaaaaagtgtttggttaa |
5665800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 546 - 583
Target Start/End: Original strand, 9935852 - 9935889
Alignment:
| Q |
546 |
gggtcaagaacttatacgtactctattatttatacact |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9935852 |
gggtcaagaacttatacgtactctattatttatacact |
9935889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 546 - 581
Target Start/End: Complemental strand, 6696433 - 6696398
Alignment:
| Q |
546 |
gggtcaagaacttatacgtactctattatttataca |
581 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
6696433 |
gggtcaagaacttatacgtactctattatttataca |
6696398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 639 - 868
Target Start/End: Original strand, 34899746 - 34899975
Alignment:
| Q |
639 |
gtcagtggtatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata |
738 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899746 |
gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata |
34899845 |
T |
|
| Q |
739 |
aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa |
838 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899846 |
aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa |
34899945 |
T |
|
| Q |
839 |
gtttggtagtttcaactttcaagttgagat |
868 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34899946 |
gtttggtagtttcaactttcaagttgagat |
34899975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 27426979 - 27426914
Alignment:
| Q |
149 |
ctttccctggaatataaaggtgtgatttttattcctaggaaaatat-gaaaaaagtgtttggttaa |
213 |
Q |
| |
|
||||||||||||| | ||||| | ||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
27426979 |
ctttccctggaatgtgaaggttaaaattttattccgaggaaaatatagaaaaaagtgtttggttaa |
27426914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 4e-68; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 176 - 315
Target Start/End: Original strand, 9972979 - 9973118
Alignment:
| Q |
176 |
tttattcctaggaaaatatgaaaaaagtgtttggttaaatagttttgttcctgggaattttattaaaaaagaaactgggaataattgaaatgtgtttgta |
275 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9972979 |
tttattcctagaaaaatatgaaaaaagtgtttggttaaatagttttgttcctgggaattttattaaaaaagaaactgggaataattgaaatgtgtttgta |
9973078 |
T |
|
| Q |
276 |
ttgcaaaatttgttcctggaaatgaatgatgtaattccaa |
315 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9973079 |
ttgcaaaatttgttcctggagatgaatgatgtaattccaa |
9973118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 13323823 - 13323927
Alignment:
| Q |
110 |
gtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaata-tgaaaaaagtgtttg |
208 |
Q |
| |
|
|||||||| | || |||| ||||||||||||||||| | ||| ||| ||||| |||||| | ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13323823 |
gtttgtttgagggttacaaaatttattcccaggaattaacttacccaggaatgtaaaggggaaatttttattcctaggaaaatacagaaaaaagtgtttg |
13323922 |
T |
|
| Q |
209 |
gttaa |
213 |
Q |
| |
|
||||| |
|
|
| T |
13323923 |
gttaa |
13323927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 9972950 - 9972986
Alignment:
| Q |
102 |
tagggtgcgtttgtttcatggatacacaatttattcc |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9972950 |
tagggtgcgtttgtttcatggatacacaatttattcc |
9972986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 33378556 - 33378664
Alignment:
| Q |
103 |
agggtgcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaag |
202 |
Q |
| |
|
|||||| |||||||||| | ||| |||||||||| |||||| | | |||| |||||||||||| || || ||||||||| ||||| ||||||||| |
|
|
| T |
33378556 |
agggtgtgtttgtttcaagtttaccaaatttattcctaggaataa-cattccttggaatataaagatgggaattttattccaaggaatttatgaaaaata |
33378654 |
T |
|
| Q |
203 |
tgtttggtta |
212 |
Q |
| |
|
|||||||||| |
|
|
| T |
33378655 |
tgtttggtta |
33378664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 1e-49; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 324 - 525
Target Start/End: Original strand, 21935843 - 21936034
Alignment:
| Q |
324 |
gtttaataagaaatagaaaaccaactaattaaacatgaactgggaaaagaaaattctactaaagaaacattcaaggaaatcaatcagcaagtaaccacat |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21935843 |
gtttaataagaaatagaaaaccaactaattaaacatgaa-tcggaaaa--------------agaaacattca--gaaatcaatcagcaagtaaccacat |
21935925 |
T |
|
| Q |
424 |
gtaaatgatgtcaatc-------gatcctttctgcattattatttttatgcatatgctttacgaaaatggagcctagtccatgtagacaataaagcaact |
516 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
21935926 |
gtaaatgatgtcaatccgaatccgatcctttctgcattattatttttatgcatatgctttacgaaaatggagcgtagttcatgtagacaataaagcaact |
21936025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 125 - 233
Target Start/End: Original strand, 21935703 - 21935811
Alignment:
| Q |
125 |
acacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaagtgtttggttaaatagttttgtt |
224 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21935703 |
acacaatttattctcaggaattatctttccctgaaatataaaggtgtgatttttatttctagaaaaatatgaaaaaagtgtttggttaaatagttttgtt |
21935802 |
T |
|
| Q |
225 |
cctgggaat |
233 |
Q |
| |
|
||||||||| |
|
|
| T |
21935803 |
cctgggaat |
21935811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 21935804 - 21935842
Alignment:
| Q |
250 |
ctgggaataattgaaatgtgtttgtattgcaaaatttgt |
288 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21935804 |
ctgggaataattgaaatgtgtttggattgcaaaatttgt |
21935842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 546 - 578
Target Start/End: Original strand, 21936048 - 21936080
Alignment:
| Q |
546 |
gggtcaagaacttatacgtactctattatttat |
578 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
21936048 |
gggtcaagaacttatacgtactctattatttat |
21936080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1954480 - 1954541
Alignment:
| Q |
1 |
aatagcccataaaaatttacaaaattttgaagataaatgccacaaaaataagagtggtgtta |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1954480 |
aatagcccataaaaatttacaaaattttgaagataaatgccacaaaaataagagtggtgtta |
1954541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2026951 - 2026891
Alignment:
| Q |
1 |
aatagcccataaaaatttacaaaattttgaagataaatgccacaaaaataagagtggtgtt |
61 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2026951 |
aatagcccataaaaatttacaaaattttgtagataaatgccacaaaaataagagtggtgtt |
2026891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 1958286 - 1958332
Alignment:
| Q |
55 |
tggtgttatataactcgagagacaatcttacaaatagatcacgaaca |
101 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1958286 |
tggtcttatataactcgagagacaatcttacaaatagatcacgaaca |
1958332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 10644289 - 10644178
Alignment:
| Q |
103 |
agggtgcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatat-gaaaaaa |
201 |
Q |
| |
|
|||| |||||||||| | || |||| ||| |||||||||| |||| |||| || ||||||| ||||| | ||||||||| |||||||||| ||||||| |
|
|
| T |
10644289 |
agggggcgtttgtttgagggttacaaaatctattcccaggtatcaacttttccaggaatatgaaggttaaaattttattcccaggaaaatatagaaaaaa |
10644190 |
T |
|
| Q |
202 |
gtgtttggttaa |
213 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10644189 |
gtgtttggttaa |
10644178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 17506909 - 17507015
Alignment:
| Q |
108 |
gcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatat-gaaaaaagtgtt |
206 |
Q |
| |
|
|||||||||| | || |||| ||| |||||||||| |||| ||||||| ||||| | ||||| | ||||||||| || ||||||| |||||||||||| |
|
|
| T |
17506909 |
gcgtttgtttgagggttacaaaatctattcccaggtatcaactttcccaggaatgtgaaggttaaaattttattcccagaaaaatatagaaaaaagtgtt |
17507008 |
T |
|
| Q |
207 |
tggttaa |
213 |
Q |
| |
|
||||||| |
|
|
| T |
17507009 |
tggttaa |
17507015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 212
Target Start/End: Complemental strand, 32661284 - 32661175
Alignment:
| Q |
102 |
tagggtgcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaa |
201 |
Q |
| |
|
||||||| |||||||||| | ||| |||||||||| |||||| | | |||| |||||||||||| || || ||||||||| ||||| ||||||||| |
|
|
| T |
32661284 |
tagggtgtgtttgtttcaagtttactaaatttattcctaggaataa-cattccttggaatataaagatgggaattttattccaaggaatttatgaaaaat |
32661186 |
T |
|
| Q |
202 |
gtgtttggtta |
212 |
Q |
| |
|
|||||||||| |
|
|
| T |
32661185 |
atgtttggtta |
32661175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 21506257 - 21506151
Alignment:
| Q |
108 |
gcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatat-gaaaaaagtgtt |
206 |
Q |
| |
|
|||||||||| | || |||| ||| ||||||||| |||| |||| || ||||| | ||||| | |||||||||||||||||||| |||||||||||| |
|
|
| T |
21506257 |
gcgtttgtttgagggttacaaaatcgattcccaggtatcaacttttccaggaatgtgaaggttaaaattttattcctaggaaaatatagaaaaaagtgtt |
21506158 |
T |
|
| Q |
207 |
tggttaa |
213 |
Q |
| |
|
||||||| |
|
|
| T |
21506157 |
tggttaa |
21506151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0697
Description:
Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 710 - 815
Alignment:
| Q |
108 |
gcgtttgtttcatggatacacaatttattcccaggaatcatctttccctggaatataaaggtgtgatttttattcctaggaaaatatgaaaaaagtgttt |
207 |
Q |
| |
|
|||||||||| | || |||| ||| ||||| |||| |||| ||||||| ||||| | ||||| | ||||||||| || ||||||| ||||||||||| |
|
|
| T |
710 |
gcgtttgtttgagggttacaaaatctattctcaggtatcaactttcccaggaatgtgaaggttaaaattttattcccagaaaaatatagaaaaagtgttt |
809 |
T |
|
| Q |
208 |
ggttaa |
213 |
Q |
| |
|
|||||| |
|
|
| T |
810 |
ggttaa |
815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University