View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2870_high_10 (Length: 363)
Name: NF2870_high_10
Description: NF2870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2870_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 2795383 - 2795050
Alignment:
| Q |
1 |
atgataagaagcttcacaagctgagtataaattcgatcacccgactttcgtgtaataatatcccacttctcaggagttgtgacaataatttgagtctctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2795383 |
atgataagaagcttcacaagctgagtataaattcgatcacccgactttcgtgtaataatatcccacttctcaggagttgtgacaataatttgagtctctt |
2795284 |
T |
|
| Q |
101 |
ccatctgtttctgtgttagtgactggtctccactaagctccctaaccttaacatcatattcacgcagacgattagataaattgccaacaatctcagttac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2795283 |
ccatctgtttctgtgttagtgactggtctccactaagctccctaaccttaacatcatattcctgcagacgattagataaattgccaacaatctcagttac |
2795184 |
T |
|
| Q |
201 |
aagagctttcataggcgcaacataaacaattttataagcactatggtcaattgaaccatcaccaggatttctatgccgtgcaatctcttgaagtatggta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2795183 |
aagagctttcataggcgcaacataaacaattttataagcactatggtcaattgaaccatcaccaggatttctatgccgtgcaatctcttgaagtatggta |
2795084 |
T |
|
| Q |
301 |
agaacagcaacattggtttttccagcaccagttg |
334 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
2795083 |
agaacagcaacattggtttttccagcaccagttg |
2795050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 29262888 - 29262568
Alignment:
| Q |
9 |
aagcttcacaagctgagtataaattcgatcacccgactttcgtgtaataatatcccacttctcaggagttgtgacaataatttgagtctcttccatctgt |
108 |
Q |
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||||||||||||||| |||||| ||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
29262888 |
aagcttcacaagctgcgtataagttcgatctcccgactttcgggtgataatatcccacttctcaggagttgtcacaataatttgagtctcttcgatctgc |
29262789 |
T |
|
| Q |
109 |
ttctgtgttagtgactggtctccactaagctccctaaccttaacatcatattcacgcagacgattagataaattgccaacaatctcagttacaagagctt |
208 |
Q |
| |
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| | ||||||||||||||||||||||||||||||||| |||||| ||| || ||| |||||||| ||||| ||||||| ||| | |||||||||| |
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| T |
29262788 |
tgcctggttagtgactggtctccactaagctccctaaccgtaacattatagtcctgcaaccgattagacaaattcccaacaacctccgccacaagagctt |
29262689 |
T |
|
| Q |
209 |
tcataggcgcaacataaacaattttataagcactatggtcaattgaaccatcaccaggatttctatgccgtgcaatctcttgaagtatggtaagaacagc |
308 |
Q |
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|||| || |||||||| ||||||||||| ||||| |||||||| ||||||||| | | ||| |||||||| ||||||| |||||| || ||||||||||| |
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| T |
29262688 |
tcattggtgcaacatatacaattttatatgcactgtggtcaatagaaccatcatcggtattcctatgccgcgcaatctgttgaaggatagtaagaacagc |
29262589 |
T |
|
| Q |
309 |
aacattggtttttccagcacc |
329 |
Q |
| |
|
|||||| |||||||||||||| |
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|
| T |
29262588 |
aacattcgtttttccagcacc |
29262568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 29189353 - 29189413
Alignment:
| Q |
49 |
cgtgtaataatatcccacttctcaggagttgtgacaataatttgagtctcttccatctgtt |
109 |
Q |
| |
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||||||||||| || || |||||||||||||| || ||||| ||| ||||||| ||||||| |
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| T |
29189353 |
cgtgtaataatgtctcatttctcaggagttgtcaccataatctgactctcttctatctgtt |
29189413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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