View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2870_high_11 (Length: 353)
Name: NF2870_high_11
Description: NF2870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2870_high_11 |
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| [»] scaffold0477 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 353
Target Start/End: Complemental strand, 10070 - 9728
Alignment:
| Q |
10 |
atattattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatagaccgtgggtgggtataggaaaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10070 |
atattattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatagac-gtgggtgggtataggaaat |
9972 |
T |
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| Q |
110 |
ttgttattccttgcccactttattccactannnnnnnnattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatat |
209 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9971 |
ttgttattccttgcccactttattccacgattttttttattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatat |
9872 |
T |
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| Q |
210 |
ctatttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagt |
309 |
Q |
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| T |
9871 |
ctatttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagt |
9772 |
T |
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| Q |
310 |
tccagtgctacgccttcaaccactcggccatctctcctacataa |
353 |
Q |
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| T |
9771 |
tccagtgctacgccttcaaccactcggccatctctcctacataa |
9728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 353
Target Start/End: Complemental strand, 18181065 - 18180723
Alignment:
| Q |
10 |
atattattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatagaccgtgggtgggtataggaaaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18181065 |
atattattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgtatagac-gtgggtgggtataggaaat |
18180967 |
T |
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| Q |
110 |
ttgttattccttgcccactttattccactannnnnnnnattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatat |
209 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18180966 |
ttgttattccttgcccactttattccacgattttttttattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatat |
18180867 |
T |
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| Q |
210 |
ctatttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagt |
309 |
Q |
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| T |
18180866 |
ctatttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagt |
18180767 |
T |
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| Q |
310 |
tccagtgctacgccttcaaccactcggccatctctcctacataa |
353 |
Q |
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| T |
18180766 |
tccagtgctacgccttcaaccactcggccatctctcctacataa |
18180723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 115 - 353
Target Start/End: Complemental strand, 37189616 - 37189381
Alignment:
| Q |
115 |
attccttgcccactttattccactannnnnnnnattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatctatt |
214 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37189616 |
attccttgcccactttattccactattttttttattacagaaaacagaaataaattaggaatagagaattcacatcaaagttggaataatgatatctatt |
37189517 |
T |
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| Q |
215 |
tgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttccag |
314 |
Q |
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| T |
37189516 |
tgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagag---ttcgaaccctcggtaaacaaaaagcctacatagcagttccag |
37189420 |
T |
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| Q |
315 |
tgctacgccttcaaccactcggccatctctcctacataa |
353 |
Q |
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| || | |||||||||||||||||||||||||||||||| |
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| T |
37189419 |
tactgcaccttcaaccactcggccatctctcctacataa |
37189381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 259 - 353
Target Start/End: Complemental strand, 244912 - 244818
Alignment:
| Q |
259 |
cggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataa |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||||||| |
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| T |
244912 |
cggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttccaatgctacgccttgaaccgctcggccatctttcctacataa |
244818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 287
Target Start/End: Original strand, 207782 - 207817
Alignment:
| Q |
252 |
aagggtgcggaaagagagggattcgaaccctcggta |
287 |
Q |
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| T |
207782 |
aagggagcggaaagagagggattcgaaccctcggta |
207817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 353
Target Start/End: Original strand, 27029783 - 27029869
Alignment:
| Q |
271 |
gattcgaaccctcggtaaacaaaaa----gcctacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataa |
353 |
Q |
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| T |
27029783 |
gattcgaaccctcggtaaaaaaaaaaaaagcttacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataa |
27029869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 287
Target Start/End: Original strand, 42790 - 42818
Alignment:
| Q |
259 |
cggaaagagagggattcgaaccctcggta |
287 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42790 |
cggaaagagagggattcgaaccctcggta |
42818 |
T |
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