View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2870_high_17 (Length: 334)
Name: NF2870_high_17
Description: NF2870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2870_high_17 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 25 - 334
Target Start/End: Original strand, 21345827 - 21346136
Alignment:
| Q |
25 |
catcaattccaccacatgaatcataaagtataacagaaaagcagtccatatgcaatcaacttccagcgtattctcggtaaaattcttgacgtatcattca |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21345827 |
catcaattccaccacatgaatcataaagtataacagaaaagcagtccatatgcaatcaacttccagcgtattctcggtaaaattcttgacgcatcattca |
21345926 |
T |
|
| Q |
125 |
tggattttaataaaatggttcatactcgcgttagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagct |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21345927 |
tggattttaataaaatggttcatactcgcgttagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagca |
21346026 |
T |
|
| Q |
225 |
tctggagaattctccaaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttctaaacct |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21346027 |
tctggagaattctccaaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttctaaacct |
21346126 |
T |
|
| Q |
325 |
aaatcctttg |
334 |
Q |
| |
|
|||||||||| |
|
|
| T |
21346127 |
aaatcctttg |
21346136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 25 - 334
Target Start/End: Original strand, 22558 - 22866
Alignment:
| Q |
25 |
catcaattccaccacatgaatcataaagtataacagaaaagcagtccatatgcaatcaacttccagcgtattctcggtaaaattcttgacgtatcattca |
124 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
22558 |
catcaattccaccacatgaatcataa-gtataacagaaaagcagtccatatgcaatcaacttccagcgtattctctgtaaaattcttgacgaatcattca |
22656 |
T |
|
| Q |
125 |
tggattttaataaaatggttcatactcgcgttagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagct |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22657 |
tggattttaataaaatggttcatactcgcgtcagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagct |
22756 |
T |
|
| Q |
225 |
tctggagaattctccaaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttctaaacct |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22757 |
tctggagaattctccaaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttctaaacct |
22856 |
T |
|
| Q |
325 |
aaatcctttg |
334 |
Q |
| |
|
|||||||||| |
|
|
| T |
22857 |
aaatcctttg |
22866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 29 - 334
Target Start/End: Original strand, 29380906 - 29381210
Alignment:
| Q |
29 |
aattccaccacatgaatcataaagtataacagaaaagcagtccatatgcaatcaacttccagcgtattctcggtaaaattcttgacgtatcattcatgga |
128 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29380906 |
aattccatgacatgaatcataa-gtataacagaaaagcagtccatatgcaatcgacttccagcgtattctcggtaaaattcttgacaaatcattcatgga |
29381004 |
T |
|
| Q |
129 |
ttttaataaaatggttcatactcgcgttagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagcttctg |
228 |
Q |
| |
|
|||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29381005 |
ttttaataaaatggctcatactcacgtcagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagcttctg |
29381104 |
T |
|
| Q |
229 |
gagaattctccaaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttctaaacctaaat |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29381105 |
gagaattctccaaggcgcgcttttctgactccaaaacagttactttatcatctgcacaatgcaaaaaagtgaaacagattcaaactttgtaaacctaaat |
29381204 |
T |
|
| Q |
329 |
cctttg |
334 |
Q |
| |
|
|||||| |
|
|
| T |
29381205 |
cctttg |
29381210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University