View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2870_high_2 (Length: 468)
Name: NF2870_high_2
Description: NF2870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2870_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 50439462 - 50439162
Alignment:
| Q |
1 |
ggaatcccaaccaagtttaatgtagatgaagctcatagaaaaatgaatggcttttcagcttgtggagatttgcttagagactaccaatgtagtct----- |
95 |
Q |
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| T |
50439462 |
ggaatcccaaccaagtttaatgtagatgaagctcatagaaaaatgaatggcttttcagcttgtggagatttgcttagagactaccaatgtagtcttatac |
50439363 |
T |
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| Q |
96 |
--------tattgtaatcttgctcgc-aaccattctcagtgtgctgagatgtaaagtttagttcatgccatgtgtattgctcgcaatcttcaccttg--- |
183 |
Q |
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| T |
50439362 |
agggtttctattgtaatcttgctcgcaaaccattctcagtgtgctgagatgtaaagtttagttcatgccatgtgtattgctcacaatcttcaccttgatc |
50439263 |
T |
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| Q |
184 |
----------------agattctaccctaattgcaactgtttttaatcaatcaacctcaatctcttatctcaaatctctcttgaaagatgttcttaatgt |
267 |
Q |
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| T |
50439262 |
atgtcgttttttagacagattctactctaattgcaactgtttttaatcaatcagcctcaatctcttatctcaaatttctcttgaaagatgttcttaatgt |
50439163 |
T |
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| Q |
268 |
c |
268 |
Q |
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| T |
50439162 |
c |
50439162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 277 - 442
Target Start/End: Complemental strand, 50439112 - 50438961
Alignment:
| Q |
277 |
ctattcctacgcagacttattagctaaaaacaaattttcttcttcttacaattgcttaaaaaaggatttcatggttttttcttcccggtttttattaatt |
376 |
Q |
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| T |
50439112 |
ctatttctacgcagacttattagctaaaaacaaattttcttcttcttacaattgcttaaaaaaggatttcatggttttt--------------attaatt |
50439027 |
T |
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| Q |
377 |
caaaatgtatttttcttcaagctatttcggtgttggattgtaagggtgttcccaccaccggtttag |
442 |
Q |
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| T |
50439026 |
caaaatgtatttttcttcaagctatctcggtgttggattgtaagggtgttcccaccaccggtttag |
50438961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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