View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2870_high_3 (Length: 399)
Name: NF2870_high_3
Description: NF2870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2870_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 2 - 384
Target Start/End: Original strand, 47764543 - 47764925
Alignment:
| Q |
2 |
ttttcttcccatactgaaatcaattatggtatctacaatttctcatatggccaagaccccggcaaagcatacgccattgggttgtgccgcggagatcttg |
101 |
Q |
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| T |
47764543 |
ttttcttcccataaagaagtcaattatggtttctacaatttctcatatggccaagaccccgacaaagcatacaccattgggttgtgccgcggagatcttg |
47764642 |
T |
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| Q |
102 |
agcagaatcagtgtcttacaaagctaaacaataccgttgcctatcttagagaacaatgtccaaatcagaaagaggcaattgtgtggggtggtgatttcac |
201 |
Q |
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| T |
47764643 |
agccgaatcagtgtcttgcaaagctaaacaataccattccctttcttagagaacaatgtccaaatcaaaaagaggcgattgtgtggggtggtgatttcac |
47764742 |
T |
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| Q |
202 |
tttatggtactccaatcgatcaatttttgggatcttggaaacttcaccaacactatatttgatttatgaaagggatgcaagtgatgtggataagtacaag |
301 |
Q |
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| T |
47764743 |
tttgtggtacttgaatcgctcaatttttgggctcttgaaaacttcacctacactatatttggttttagaaaggaatgcaagtgacgcagatcagtacaag |
47764842 |
T |
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| Q |
302 |
caagcattgagtaacttgatgacaaatctaacagaaaaagctgtattaggtgactctcgtcgtaagtatgacgcagatagtgt |
384 |
Q |
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| T |
47764843 |
aaagcattgagtaacttgatgacaaatctaatagaaaaggctgcatcaggtgactctcgtcgtaagtatgatgcagatagtgt |
47764925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 3 - 386
Target Start/End: Original strand, 47772934 - 47773317
Alignment:
| Q |
3 |
tttcttcccatactgaaatcaattatggtatctacaatttctcatatggccaagaccccggcaaagcatacgccattgggttgtgccgcggagatcttga |
102 |
Q |
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| T |
47772934 |
tttcttctcatacagaaatcaactacggtttctacaatttctcatatggcgaagaaccaaacaaagcatatgtcataggggtgtgtcgcggagatattga |
47773033 |
T |
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| Q |
103 |
gcagaatcagtgtcttacaaagctaaacaataccgttgcctatcttagagaacaatgtccaaatcagaaagaggcaattgtgtggggtggtgatttcact |
202 |
Q |
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| T |
47773034 |
gccaaatcagtgtcgtacaaacctaaacaattccattggttatctcagagagcagtgtccaaaccaaaaagaggcaattgtgtggggtggtgatttcact |
47773133 |
T |
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| Q |
203 |
ttatggtactccaatcgatcaatttttgggatcttggaaacttcaccaacactatatttg-atttatgaaagggatgcaagtgatgtggataagtacaag |
301 |
Q |
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| T |
47773134 |
ttgtggtactcgaatcgctcaatttttgggctcttggaaacttcacctacactctatttgtattta-caacggaatacaagttatgtggatcagtacatg |
47773232 |
T |
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| Q |
302 |
caagcattgagtaacttgatgacaaatctaacagaaaaagctgtattaggtgactctcgtcgtaagtatgacgcagatagtgtct |
386 |
Q |
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| T |
47773233 |
caagcagtggctaacttgatgcgaaatctaacggccaaagctgctttaggtgactcgcgtcgtaagtacgaagcagatagtgtct |
47773317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 47756043 - 47756114
Alignment:
| Q |
33 |
tctacaatttctcatatggccaagaccccggcaaagcatacgccattgggttgtgccgcggagatcttgagc |
104 |
Q |
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| T |
47756043 |
tctaaaatttctcatatggccaagacccagacaaagcataggccactgggttgcgtcacgtagatcttgagc |
47756114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 5 - 244
Target Start/End: Complemental strand, 27371824 - 27371585
Alignment:
| Q |
5 |
tcttcccatactgaaatcaattatggtatctacaatttctcatatggccaagaccccggcaaagcatacgccattgggttgtgccgcggagatcttgagc |
104 |
Q |
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| T |
27371824 |
tcttcccacacagaaattaactacggtttttacaatttctcatatggccaacacccagacaaaataaaggccattgggttgtgtcgcggagatcttgagc |
27371725 |
T |
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| Q |
105 |
agaatcagtgtcttacaaagctaaacaataccgttgcctatcttagagaacaatgtccaaatcagaaagaggcaattgtgtggggtggtgatttcacttt |
204 |
Q |
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| T |
27371724 |
caaatcagtgtcgtagaaacctaaacaattccattgcctatcttagagcaaagtgtccaaatcaaaaagaggccattttgtggggtgatgatgtcacttt |
27371625 |
T |
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| Q |
205 |
atggtactccaatcgatcaatttttgggatcttggaaact |
244 |
Q |
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| T |
27371624 |
aaggtacacatatcgttcaatacttgggagcttggaaact |
27371585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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