View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2870_high_4 (Length: 397)
Name: NF2870_high_4
Description: NF2870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2870_high_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 55178066 - 55178459
Alignment:
| Q |
1 |
aaatctgttttcccatgtcaacatagattcatccttgttcttacctatatccattatttccaatttcatcagtaaataatatatcatatccactttctag |
100 |
Q |
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| T |
55178066 |
aaatctgtcttcccatgtcaacatagattcatccttgttcttacctatatccattatttccaatttcatcagtaaataatatatcatatccactttctag |
55178165 |
T |
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| Q |
101 |
tgtatatatactaattctatttttaattaattacattcaattttgtaacttccatttttatcagaaaagcatttagtgtgtacaggctagtagttacaat |
200 |
Q |
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| T |
55178166 |
tgtatatatactaattctatttttaattaattacattcaattttgtaacttccatttttatcagaaaagcatttagtgtgtacaggctagtagttacaat |
55178265 |
T |
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| Q |
201 |
gataagtgaaaagagaagaaatattagtaggactaaccgcgtagattttggtctaaggttccttgggggaaataatcataaacagatatcgaagtctcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
55178266 |
gataagtgaaaagagaagaaatattagtaggactaaccgcgtagattttggtctaaggttccttgggggaaataatcataaacagatatcaaagtctcat |
55178365 |
T |
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| Q |
301 |
ctctgcttctccacatccctagcagaggagcgatgcgtgggtggttcaacgaggacattatttcaacttcaagtgcaaaatctttgaaagcttcttt |
397 |
Q |
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| T |
55178366 |
ct---ctaatgcaaatccctagcagaggagcgatgcgtgggtggttcaacgaggacattatttcaacttcaagtgcaaaatctttgaaagcttcttt |
55178459 |
T |
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