View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2870_high_6 (Length: 376)
Name: NF2870_high_6
Description: NF2870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2870_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 4370320 - 4369958
Alignment:
| Q |
1 |
gagagtaggaccataataaacttgttagtgaacagtccaaacggaacattctttttgaagtctattgatgcaactgatatgttggaatcgcctgacaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4370320 |
gagagtaggaccataataaacttgttagtgaacagtccaaacggaacattctttttgaagtctattgatgcaactgatatgttggaatcgcctgacaaac |
4370221 |
T |
|
| Q |
101 |
tctttcggattttggacaacattgttgaagaggttggagaagaaaatgttgtccaaattgtgacggacaatacaccattctgcagagctgttggtgagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4370220 |
tctttcggattttggacaacattgttgaagaggttggagaagaaaatgttgtccaaattgtgacggacaatacaccattctgcagagctgttggtgagat |
4370121 |
T |
|
| Q |
201 |
gttgatggagaaaagaactaggctgtattggaccccttgtgcaacaaattgcattcagatgattttggcagactgtgagacgaatatacctattcactca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4370120 |
gttgatggagaaaagaactaggctgtattggaccccttgtgcaacaaattgcattcagatgattttggcagactgtgagacgaatatacctattcactca |
4370021 |
T |
|
| Q |
301 |
gagataactaagaaatgtcaagatcttatagcctttatttatataagcccttctgtcaagtct |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
4370020 |
gagataactaagaaatgtcaagatcttatagcctttatttatgtaagcccttctgtcaagtct |
4369958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 4365920 - 4365558
Alignment:
| Q |
1 |
gagagtaggaccataataaacttgttagtgaacagtccaaacggaacattctttttgaagtctattgatgcaactgatatgttggaatcgcctgacaaac |
100 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
4365920 |
gagagtaggaccatactaaactggttagtgaacagtccaaagggaacattctttttgaagtctattgatgcgtctgatatgttggaatcgcctgagaaac |
4365821 |
T |
|
| Q |
101 |
tctttcggattttggacaacattgttgaagaggttggagaagaaaatgttgtccaaattgtgacggacaatacaccattctgcagagctgttggtgagat |
200 |
Q |
| |
|
||||| ||| |||| || |||||||||||||||| |||||||||| |||||| ||||||||||| ||||| || || | ||| | | | ||| |
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|
| T |
4365820 |
tctttaagatgatggatgacgttgttgaagaggttggggaagaaaatgctgtccacattgtgacggaatatacagaatactacgcagcagccgctatgat |
4365721 |
T |
|
| Q |
201 |
gttgatggagaaaagaactaggctgtattggaccccttgtgcaacaaattgcattcagatgattttggcagactgtgagacgaatatacctattcactca |
300 |
Q |
| |
|
| |||||| |||||| |||||||||||||||||||||||||||||| ||||||||| || ||| |||| |||||||||| ||||||||||||||||||| |
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| T |
4365720 |
gctgatggcgaaaaggactaggctgtattggaccccttgtgcaacagattgcattctgacgatattggaagactgtgaggagaatatacctattcactca |
4365621 |
T |
|
| Q |
301 |
gagataactaagaaatgtcaagatcttatagcctttatttatataagcccttctgtcaagtct |
363 |
Q |
| |
|
||||||| |||||| ||||| ||||||| |||||||| ||| ||| ||||||||||||||| |
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|
| T |
4365620 |
gagataattaagaagtgtcagagtcttataacctttattcatacaaggccttctgtcaagtct |
4365558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 7 - 255
Target Start/End: Complemental strand, 4360518 - 4360270
Alignment:
| Q |
7 |
aggaccataataaacttgttagtgaacagtccaaacggaacattctttttgaagtctattgatgcaactgatatgttggaatcgcctgacaaactctttc |
106 |
Q |
| |
|
|||| |||| ||||||||||| ||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||| |
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| T |
4360518 |
aggaacatactaaacttgttactgaacagtccaaagggaacattctttttgaagactattgatgcgtctgatatgttggaatcgtctgagaaactcttta |
4360419 |
T |
|
| Q |
107 |
ggattttggacaacattgttgaagaggttggagaagaaaatgttgtccaaattgtgacggacaatacaccattctgcagagctgttggtgagatgttgat |
206 |
Q |
| |
|
|| |||| || |||||||||||||||| ||||||||||||||||| |||| ||||| ||||||||| || ||||| | || ||||||||| |
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| T |
4360418 |
aaatgatggatgacgttgttgaagaggttggggaagaaaatgttgtccacgttgtaacggaatatacaccatactatgtagctgccgctgggatgttgat |
4360319 |
T |
|
| Q |
207 |
ggagaaaagaactaggctgtattggaccccttgtgcaacaaattgcatt |
255 |
Q |
| |
|
|| |||||| ||||||||||||||||| ||||| |||||| |||||||| |
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|
| T |
4360318 |
ggcgaaaaggactaggctgtattggacaccttgcgcaacacattgcatt |
4360270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 44 - 246
Target Start/End: Original strand, 4414439 - 4414640
Alignment:
| Q |
44 |
gaacattctttttgaagtctattgatgcaactgatatgttggaatcgcctgacaaactctttcggattttggacaacattgttgaagaggttggagaaga |
143 |
Q |
| |
|
||||||||||||||||||| ||||||| | ||||||||||||| ||| ||||||||||| ||| |||| | ||||| ||||||||||| ||||| |
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|
| T |
4414439 |
gaacattctttttgaagtccgttgatgcgtcgaatatgttggaatcacctaacaaactctttaagatgatggatgaaattgtagaagaggttgg-gaaga |
4414537 |
T |
|
| Q |
144 |
aaatgttgtccaaattgtgacggacaatacaccattctgcagagctgttggtgagatgttgatggagaaaagaactaggctgtattggaccccttgtgca |
243 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | | || || || || ||||||||||| ||||| |||||| |||||| |||||||||| ||||||||| |
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|
| T |
4414538 |
aaatgttgtccaaattgtgacagacaatacaacctactacaaagttgctggtgagatgtagatggtgaaaaggactaggttgtattggacaccttgtgca |
4414637 |
T |
|
| Q |
244 |
aca |
246 |
Q |
| |
|
||| |
|
|
| T |
4414638 |
aca |
4414640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 49 - 241
Target Start/End: Complemental strand, 4390111 - 4389919
Alignment:
| Q |
49 |
ttctttttgaagtctattgatgcaactgatatgttggaatcgcctgacaaactctttcggattttggacaacattgttgaagaggttggagaagaaaatg |
148 |
Q |
| |
|
|||||||||||||| ||||||| | ||||||||||||||| |||| ||| | ||| ||| |||| | |||||||||||||||| |||||||||| |
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|
| T |
4390111 |
ttctttttgaagtcggttgatgcgtccgatatgttggaatcgtctgagaaattgtttaagatgatggatgatgttgttgaagaggttggtgaagaaaatg |
4390012 |
T |
|
| Q |
149 |
ttgtccaaattgtgacggacaatacaccattctgcagagctgttggtgagatgttgatggagaaaagaactaggctgtattggaccccttgtg |
241 |
Q |
| |
|
|||| ||| |||||||||| ||||| ||| | |||||||| ||||||||||||||||||||| || |||||| |||||||||| ||||||| |
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|
| T |
4390011 |
ttgttcaagttgtgacggataatacggcatatttcagagctgctggtgagatgttgatggagaagaggactaggttgtattggacaccttgtg |
4389919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 46 - 268
Target Start/End: Complemental strand, 4377431 - 4377209
Alignment:
| Q |
46 |
acattctttttgaagtctattgatgcaactgatatgttggaatcgcctgacaaactctttcggattttggacaacattgttgaagaggttggagaagaaa |
145 |
Q |
| |
|
||||||||||||||||| ||||||| | |||||| ||||||||||||| ||| | ||| ||| |||| | |||||||||||||||| ||||||| |
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|
| T |
4377431 |
acattctttttgaagtcggttgatgcgtcagatatgatggaatcgcctgagaaattgtttaagatgatggatgatgttgttgaagaggttggggaagaaa |
4377332 |
T |
|
| Q |
146 |
atgttgtccaaattgtgacggacaatacaccattctgcagagctgttggtgagatgttgatggagaaaagaactaggctgtattggaccccttgtgcaac |
245 |
Q |
| |
|
||||||| ||| |||| ||||| ||||| | | | || ||||| ||||||||||||||||||||| || |||||| |||||||||| |||||||| || |
|
|
| T |
4377331 |
atgttgttcaagttgtaacggataatacgacttatttcaaagctgctggtgagatgttgatggagaagaggactaggttgtattggacaccttgtgcgac |
4377232 |
T |
|
| Q |
246 |
aaattgcattcagatgattttgg |
268 |
Q |
| |
|
| | |||||| ||||||| |||| |
|
|
| T |
4377231 |
acactgcattgagatgatgttgg |
4377209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 49 - 296
Target Start/End: Complemental strand, 4385001 - 4384754
Alignment:
| Q |
49 |
ttctttttgaagtctattgatgcaactgatatgttggaatcgcctgacaaactctttcggattttggacaacattgttgaagaggttggagaagaaaatg |
148 |
Q |
| |
|
|||||||| ||||| ||||||| | ||||||||||||||| |||| ||| | ||| ||| |||| | |||||||||||||||| |||||||||| |
|
|
| T |
4385001 |
ttctttttaaagtcggttgatgcgtcagatatgttggaatcgtctgagaaattgtttaagatgatggatgatgttgttgaagaggttggggaagaaaatg |
4384902 |
T |
|
| Q |
149 |
ttgtccaaattgtgacggacaatacaccattctgcagagctgttggtgagatgttgatggagaaaagaactaggctgtattggaccccttgtgcaacaaa |
248 |
Q |
| |
|
|||| ||| |||| ||||| ||||| | | | || ||||| ||||||||||||||||||||| || |||||| |||||||||| |||||||| ||| | |
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|
| T |
4384901 |
ttgttcaagttgtcacggataatacggcttatttcaaagctgctggtgagatgttgatggagaagaggactaggttgtattggacaccttgtgcgacaca |
4384802 |
T |
|
| Q |
249 |
ttgcattcagatgattttggcagactgtgagacgaatatacctattca |
296 |
Q |
| |
|
|||||| ||| ||| |||| ||| | ||||| ||| |||||| |||| |
|
|
| T |
4384801 |
ctgcattgagaggatgttggaagattatgagaagaagatacctgttca |
4384754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 263
Target Start/End: Original strand, 5725395 - 5725643
Alignment:
| Q |
12 |
cataataaacttgttagtgaacagtccaaacggaacattctttttgaagtctattgatgcaactgatatgttggaa--tcgcctgacaaactctttcgga |
109 |
Q |
| |
|
|||| ||||||| || || ||||||||||| ||||||||||||||||||||| |||| || ||||||| || || ||||| |||| ||| || |
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|
| T |
5725395 |
catactaaacttcttcgtaaacagtccaaagggaacattctttttgaagtctgttgaatcagctgatat-----aagttcacctgaagaactatttaaga |
5725489 |
T |
|
| Q |
110 |
ttttggacaacattgttgaagaggttggagaagaaaatgttgtccaaattgtgacggacaatacaccattctgcagagctgttggtgagatgttgatgga |
209 |
Q |
| |
|
| |||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| | || ||| || | | |||||||||||||||| | |
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|
| T |
5725490 |
tgatggatgacattgttgaagaagttggggaagaaaatgttgtccaaattgtgacggacagtgcaacatactatgaaaaggctggtgagatgttgatgaa |
5725589 |
T |
|
| Q |
210 |
gaaaagaactaggctgtattggaccccttgtgcaacaaattgcattcagatgat |
263 |
Q |
| |
|
|||||| |||||| |||||||||| |||||||||||| |||||| ||||||| |
|
|
| T |
5725590 |
gaaaaggactaggttgtattggacaccttgtgcaacacggtgcattgagatgat |
5725643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 15658720 - 15658753
Alignment:
| Q |
122 |
ttgttgaagaggttggagaagaaaatgttgtcca |
155 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
15658720 |
ttgttgaagagattggagaagaaaatgttgtcca |
15658753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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