View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2871_high_1 (Length: 566)
Name: NF2871_high_1
Description: NF2871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2871_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 55980256 - 55980722
Alignment:
| Q |
1 |
cagcttcggttttgggtcgaaatgttgtagttcggactactgagaatgtaaatgggtcgaagaaggatgttatggtgggtcatgttagtgggattaat-- |
98 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
55980256 |
cagcttcggttttgggtcgaaatgttgtggttcggactactgagaatgtaaatgggtcgaagaaggatcttatggtgggtcatgttagtgggattaataa |
55980355 |
T |
|
| Q |
99 |
-ggtgggaaagtgacccgaactgtttcgtgtcatcagagcttgtttccgtatttgctttattattgtcactcggttcctaaggttagggtttatcaagca |
197 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55980356 |
tggtggaaaaatgacccgaactgtttcgtgtcatcagagcttgtttcagtatttgctttattattgtcactcggttcctaaggttagggtttatcaagca |
55980455 |
T |
|
| Q |
198 |
gagctacttgacccgaaaactaaggataaaattaatcaaggtgttgctgtttgtcatttggatacatcagattggagtcctactcatggtgcttttgtgt |
297 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55980456 |
gagctacttgacccgaaaattaaggataaaattaatcaaggtgttgctgtttgtcatttggatacatcagattggagtcctactcatggtgcttttgtgt |
55980555 |
T |
|
| Q |
298 |
ctcttgggtcgggtccgggacaaattgaggtatgtcactggatttttgagaatgatatgtcatgggcagatgctgattaagaagattgtgaagaatgaga |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
55980556 |
ctcttgggtcgggtccgggacaaattgaggtatgtcactggatttttgagaatgatatgtcatgggcagttgctgattaagaagattgtgaagaatgaga |
55980655 |
T |
|
| Q |
398 |
aaaagatgaatggttcaataggtagaaatcaaccgggtgtttttctctactaagaaattcaacagtt |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
55980656 |
aaaagatgaatggttcaataggtagaaatcaaccggttgtttttctctactaagaaattcaacagtt |
55980722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 557
Target Start/End: Original strand, 55980774 - 55980803
Alignment:
| Q |
528 |
gatagaatagttaatgtatggtattacatt |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
55980774 |
gatagaatagttaatgtatggtattacatt |
55980803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 4 - 429
Target Start/End: Original strand, 14866352 - 14866777
Alignment:
| Q |
4 |
cttcggttttgggtcgaaatgttgtagttcggactactgagaatgtaaatgggtcgaagaaggatgttatggtgggtcatgttagtgggattaatggtgg |
103 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| || |
|
|
| T |
14866352 |
cttcggttttgggtcgaaatgtggtggttcggactactgagaatgtaaatgggtcgaagaaggatgttatggtgggtcgggttaatgggattaatggcgg |
14866451 |
T |
|
| Q |
104 |
gaaagtgacccgaactgtttcgtgtcatcagagcttgtttccgtatttgctttattattgtcactcggttcctaaggttagggtttatcaagcagagcta |
203 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
14866452 |
gaaagtgacccggtctgtttcgtgtcatcagagtttgtttccgtatttgctttattattgtcactcggttcctaaggttcgggtttatcaagcggagcta |
14866551 |
T |
|
| Q |
204 |
cttgacccgaaaactaaggataaaattaatcaaggtgttgctgtttgtcatttggatacatcagattggagtcctactcatggtgcttttgtgtctcttg |
303 |
Q |
| |
|
||||||||||| | ||| ||||| || |||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
14866552 |
cttgacccgaagagtaaagataagatcaatcaaggggttgctgtttgtcatttggatacttctgattggagtccaactcatggtgcttttatgtctcttg |
14866651 |
T |
|
| Q |
304 |
ggtcgggtccgggacaaattgaggtatgtcactggatttttgagaatgatatgtcatgggcagatgctgattaagaagattgtgaagaatgagaaaaaga |
403 |
Q |
| |
|
||||||||||||| | |||||||| ||||| |||||||||||||||||| |||||||| ||| |||||||||||||| ||| ||||||||||||||| |
|
|
| T |
14866652 |
ggtcgggtccgggtcggattgaggtttgtcattggatttttgagaatgatttgtcatggacagttgctgattaagaagcttgggaagaatgagaaaaaat |
14866751 |
T |
|
| Q |
404 |
tgaatggttcaataggtagaaatcaa |
429 |
Q |
| |
|
|||||||| |||||| || ||||||| |
|
|
| T |
14866752 |
tgaatggtgcaatagataaaaatcaa |
14866777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 175
Target Start/End: Complemental strand, 27065660 - 27065515
Alignment:
| Q |
30 |
gttcggactactgagaatgtaaatgggtcgaagaaggatgttatggtgggtcatgttagtgggattaatggtgggaaagtgacccgaactgtttcgtgtc |
129 |
Q |
| |
|
|||||| | |||||||||||||||||| || |||||||| ||||||||| | |||| ||||| |||||||| ||||| || | |||| ||||||| |
|
|
| T |
27065660 |
gttcggtccactgagaatgtaaatggggcgggcaaggatgtcatggtgggtaaagttaaggggataaatggtggaaaagttactgaatctgtatcgtgtc |
27065561 |
T |
|
| Q |
130 |
atcagagcttgtttccgtatttgctttattattgtcactcggttcc |
175 |
Q |
| |
|
| ||||| |||||||| |||||| | || || |||||||||||||| |
|
|
| T |
27065560 |
accagagtttgtttccttatttgttatactactgtcactcggttcc |
27065515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 362
Target Start/End: Complemental strand, 27053017 - 27052886
Alignment:
| Q |
231 |
aatcaaggtgttgctgtttgtcatttggatacatcagattggagtcctactcatggtgcttttgtgtctcttgggtcgggtccgggacaaattgaggtat |
330 |
Q |
| |
|
||||| |||||||| | ||||| ||||||||| | | ||||||||| ||||||||||| || || ||||||||| ||||| || || ||||| || | |
|
|
| T |
27053017 |
aatcatggtgttgcgatctgtcacttggatacaactgcttggagtcccactcatggtgcattcatgactcttgggttcggtcctggtcagattgaagtgt |
27052918 |
T |
|
| Q |
331 |
gtcactggatttttgagaatgatatgtcatgg |
362 |
Q |
| |
|
|||| ||||| ||||||||||||||| ||||| |
|
|
| T |
27052917 |
gtcattggatatttgagaatgatatgacatgg |
27052886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 138 - 352
Target Start/End: Complemental strand, 27079269 - 27079055
Alignment:
| Q |
138 |
ttgtttccgtatttgctttattattgtcactcggttcctaaggttagggtttatcaagcagagctacttgacccgaaaactaaggataaaattaatcaag |
237 |
Q |
| |
|
|||||||| |||||||| || ||||| ||||||||||| |||||| | |||||| ||||||| || | || || | |||||| || || ||||| | |
|
|
| T |
27079269 |
ttgtttccttatttgctatactattgccactcggttccaaaggttcgtgtttatgaagcagatcttttagatcctgagtctaaggtgaagataaatcatg |
27079170 |
T |
|
| Q |
238 |
gtgttgctgtttgtcatttggatacatcagattggagtcctactcatggtgcttttgtgtctcttgggtcgggtccgggacaaattgaggtatgtcactg |
337 |
Q |
| |
|
|||||||| ||||||| || |||||| | | |||||| || || || ||||| || || |||||||||| |||||||| | ||||| || ||||| || |
|
|
| T |
27079169 |
gtgttgctatttgtcacttagatacaactgcttggagcccaacacacggtgcattcatggctcttgggtctggtccgggtaagattgaagtgtgtcattg |
27079070 |
T |
|
| Q |
338 |
gatttttgagaatga |
352 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
27079069 |
gatctttgagaatga |
27079055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 27053218 - 27053142
Alignment:
| Q |
30 |
gttcggactactgagaatgtaaatgggtcgaagaaggatgttatggtgggtcatgttagtgggattaatggtgggaa |
106 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| || |||||||||| ||||| || | | ||| ||||||||||| |
|
|
| T |
27053218 |
gttcggtccactgagaatgtaaatgggtcgaacaacaatgttatggtaggtcaagtaaaggagataaatggtgggaa |
27053142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 356
Target Start/End: Original strand, 35179962 - 35180036
Alignment:
| Q |
282 |
catggtgcttttgtgtctcttgggtcgggtccgggacaaattgaggtatgtcactggatttttgagaatgatatg |
356 |
Q |
| |
|
|||||||||||| || | | ||||| || || ||| |||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
35179962 |
catggtgcttttttggcgttagggtctggacctggaaaaattgaggtgtgtcattggatttttgagaatgatatg |
35180036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University