View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2871_high_3 (Length: 273)
Name: NF2871_high_3
Description: NF2871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2871_high_3 |
 | |
|
| [»] scaffold0111 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 90 - 263
Target Start/End: Original strand, 43536336 - 43536509
Alignment:
| Q |
90 |
atactaaagattaaatagttaaattattaaactaatgctattttaaggccgtatcagctatatgtcataaaatttagaagaccaaaaatttaaggaannn |
189 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43536336 |
atactaaagattaaacagttaaattattaaactaatgctattttaaggctgtatcagctatatgtcataaaatttagaagaccaaaaatttaaggaattt |
43536435 |
T |
|
| Q |
190 |
nnnnagcgactaaaacttaaagttggtatatttagaggaactataaacatatttattaaatatgttggtgatga |
263 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43536436 |
ttttagggactaaaacttaaagttggtatatttagaggaactataaacatatttattaaatatgttggtgatga |
43536509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 54361762 - 54361719
Alignment:
| Q |
94 |
taaagattaaatagttaaattattaaactaatgctattttaagg |
137 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
54361762 |
taaagattaaatagttagattattaaactaatgatattttaagg |
54361719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 42111648 - 42111612
Alignment:
| Q |
99 |
attaaatagttaaattattaaactaatgctattttaa |
135 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42111648 |
attaaatagttaaattattaaactaatgatattttaa |
42111612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 18798460 - 18798507
Alignment:
| Q |
197 |
gactaaaacttaaagttggtatatttagaggaactataaacatattta |
244 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
18798460 |
gactaaaacaaaaagttggtatatttataggaactaaaaacatattta |
18798507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 47587443 - 47587486
Alignment:
| Q |
94 |
taaagattaaatagttaaattattaaactaatgctattttaagg |
137 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
47587443 |
taaatattaaatatttaaattattaaactaatgatattttaagg |
47587486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 9661806 - 9661765
Alignment:
| Q |
94 |
taaagattaaatagttaaattattaaactaatgctattttaa |
135 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
9661806 |
taaagattaaatagttaaattattaagttaatgatattttaa |
9661765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 29181282 - 29181320
Alignment:
| Q |
96 |
aagattaaatagttaaattattaaactaatgctatttta |
134 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
29181282 |
aagatttaatagttaaattattaaactaatgatatttta |
29181320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 37991939 - 37991980
Alignment:
| Q |
94 |
taaagattaaatagttaaattattaaactaatgctattttaa |
135 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
37991939 |
taaagatgaaatagttaaattattaaactaatagtattttaa |
37991980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 557876 - 557835
Alignment:
| Q |
94 |
taaagattaaatagttaaattattaaactaatgctattttaa |
135 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
557876 |
taaagattaaatagttaaactattaaactaataatattttaa |
557835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 40810 - 40846
Alignment:
| Q |
208 |
aaagttggtatatttagaggaactataaacatattta |
244 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
40810 |
aaagttggtatatttataggaactaaaaacatattta |
40846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University