View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2871_low_1 (Length: 671)
Name: NF2871_low_1
Description: NF2871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2871_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 19 - 559
Target Start/End: Complemental strand, 31427058 - 31426518
Alignment:
| Q |
19 |
acctctgtacctcaacattcagaaaaacttcatcatcaagattctctaacacgaccatatcatcttgattccattcagggttaacacctacagcaatctt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31427058 |
acctctgtacctcaacattcagaaaaacttcatcatcaagattctctaacacgaccatatcatcttgattccattcagggttaacacctacagcaatctt |
31426959 |
T |
|
| Q |
119 |
ggtggaagcttcttcatcaggctttaaccaatacaccacattgtaagctctgttgttaacacttgggtaatttgcggggttgtcgattccttcagccttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31426958 |
ggtggaagcttcttcatcaggctttaaccaatacaccacattgtaagctctgttgttaacacttgggtaatttgcggggttgtcgattccttcagccttg |
31426859 |
T |
|
| Q |
219 |
taaatcatcacatgcaaagcaactttgaattcttctgtgaggatgcttttgctcttttggtttgcattgttcaagggttttggtgatggtgatggttcag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31426858 |
taaatcatcacatgcaaagcaactttgaattcttctgtgaggatgcttttgctcttttggtttgcattgttcaagggttttggtgatggtgatggtgcag |
31426759 |
T |
|
| Q |
319 |
acacacgtgtgatgctgcatttttgggcttgtatttctggctttcttttcttgattggaagaaaggtcttggtcgtcatggtggaaacaaagaagaaagg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31426758 |
acacacgtgtgatgctgcatttttgggcttgtatttctggctttcttttcttgattggaagaacggtcttggtcgtcatggtggaaacaaagaagaaagg |
31426659 |
T |
|
| Q |
419 |
ttttcacgtgcaaaactgatcaaagaaaaagaagaaatattgaaggttatggcataagaattgtgaataatgtggaagattataacaacttgcaagaaat |
518 |
Q |
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| T |
31426658 |
ttttcacgtgcaaaactgatcaaagaaaaagaagaaatattgaaggttatggcacaagaattgtgaataatgtgggagattataacaacttgcaagaaat |
31426559 |
T |
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| Q |
519 |
gaaaatggaatggaagaagnnnnnnngagagtgaaatttgg |
559 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| |
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| T |
31426558 |
gaaaatggaatggaagaagaaaaaaagagagtgaaatttgg |
31426518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 552 - 652
Target Start/End: Complemental strand, 31426488 - 31426388
Alignment:
| Q |
552 |
aaatttggcggttcagttgcttggttttctagcttgactttgactaggtagattcttctaactgattggataactatcaagtagaaaaaataggaggaac |
651 |
Q |
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| T |
31426488 |
aaatttggcggttcagttgcttggttttctagcttgactttgactaggtagattcttctaactgattggataactatcaagtagaaaaaataggaggaac |
31426389 |
T |
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| Q |
652 |
a |
652 |
Q |
| |
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| |
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| T |
31426388 |
a |
31426388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 19 - 536
Target Start/End: Complemental strand, 7172019 - 7171510
Alignment:
| Q |
19 |
acctctgtacctcaacattcagaaaaacttcatcatcaagattctctaacacgaccatatcatcttgattccattcagggttaacacctacagcaatctt |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
7172019 |
acctctgtacctcaacattcagaaaaacttcatcatcaagattctctaacacgatcatatcatcttgattcctttcagggttaacacctaccgcaatctt |
7171920 |
T |
|
| Q |
119 |
ggtggaagcttcttcatcaggctttaaccaatacaccacattgtaagctctgttgttaacacttgggtaatttgcggggttgtcgattccttcagccttg |
218 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
7171919 |
ggtggaagcttcttcatcaggctttaaccagtacaccacattgtaagctctgttgttaacacttggataatttgtggggttgtcgattccttcagccttg |
7171820 |
T |
|
| Q |
219 |
taaatcatcacatgcaaagcaactttgaattcttctgtgaggatgcttttgctcttttggtttgcattgttcaagggttttggtgatggtgatggttcag |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| |
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| T |
7171819 |
aaaatcatcacatgcaaagcaactttgaattcttctgtgatgatgcttttgctcttttggtctgcattgtttaagggttttggtgatggtgatggtgcag |
7171720 |
T |
|
| Q |
319 |
acacacgtgtgatgctgcatttttgggcttgtatttctggctttcttttcttgattggaagaaaggtcttggtcgtcatggtggaaacaaagaagaaagg |
418 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| |
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| T |
7171719 |
acacacgtgtgatgctgcatttttgggtttgtatctctggctttcttttcttgattggaagaacaatcttg---gtcatggtggaaacaaacaagaaa-- |
7171625 |
T |
|
| Q |
419 |
ttttcacgtgcaaaactgatcaaagaaaaagaagaaatattgaaggttatggcataagaattgtgaataatgtggaagattataacaacttgcaagaaat |
518 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7171624 |
aattcacgtgcaaaactgatcaaagaaatagaagaaatattgaagg---tggtagaagaattgtgaataatgtgggggattataacaacttgcaagaaat |
7171528 |
T |
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| Q |
519 |
gaaaatggaatggaagaa |
536 |
Q |
| |
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|||||||||||||||||| |
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| T |
7171527 |
gaaaatggaatggaagaa |
7171510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 551 - 626
Target Start/End: Complemental strand, 7171456 - 7171381
Alignment:
| Q |
551 |
gaaatttggcggttcagttgcttggttttctagcttgactttgactaggtagattcttctaactgattggataact |
626 |
Q |
| |
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||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7171456 |
gaaatgtggcggttcagctgcttggttttctagcttgaccttgactaggtagattcttctaactgattggataact |
7171381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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