View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2871_low_3 (Length: 415)
Name: NF2871_low_3
Description: NF2871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2871_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 24 - 398
Target Start/End: Complemental strand, 48645876 - 48645502
Alignment:
| Q |
24 |
ttctacttcaagtggaaataatgataataagaacaagaagtacaaaggtgtgagattgagaaagtggggaaaatgggtatctgaaataaggctaccaaat |
123 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48645876 |
ttctacctcaagtggaaataatgataataagaacaagaagtacaaaggtgtgagattgagaaagtggggaaaatgggtatctgaaataaggctaccaaat |
48645777 |
T |
|
| Q |
124 |
agtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagcatttgatgctgcactttattgtcttcgcggtcgtcatgcaaatt |
223 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48645776 |
agtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagcatttgatgctgcactttattgtcttcgtggtcgtcatgcaaatt |
48645677 |
T |
|
| Q |
224 |
tcaatttccttgatacacctctcaatttggatatcaatgcagtttctaacaattcacttacaccacaacaaattcgagaggttgctgcaaattttgctaa |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48645676 |
tcaatttccttgatacacctctcaatttggatatcaatgcagtttctaacaattcacttacaccacaacaaattcgagaggttgctgcaaattttgctaa |
48645577 |
T |
|
| Q |
324 |
caaaaatccaccaattattgataataataataatggaaataatagtaatgttcaatccaatatggtgacggaaat |
398 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48645576 |
caaaaatccaccaattattgataataataataatggaaataatagtaatgttcaatccaatatggtgacggaaat |
48645502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 24 - 398
Target Start/End: Complemental strand, 48654292 - 48653915
Alignment:
| Q |
24 |
ttctacttcaagtggaaataatgataataaga---acaagaagtacaaaggtgtgagattgagaaagtggggaaaatgggtatctgaaataaggctacca |
120 |
Q |
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|
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48654292 |
ttctacttcaagtggaaataatgataataagactgagaagaagtacaaaggtgtgagattgagaaagtggggaaaatgggtatctgaaataaggctacca |
48654193 |
T |
|
| Q |
121 |
aatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagcatttgatgctgcactttattgtcttcgcggtcgtcatgcaa |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48654192 |
aatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagcatttgatgctgcactttattgtcttcgtggtcgtcatgcaa |
48654093 |
T |
|
| Q |
221 |
atttcaatttccttgatacacctctcaatttggatatcaatgcagtttctaacaattcacttacaccacaacaaattcgagaggttgctgcaaattttgc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
48654092 |
atttcaatttccttgatacacctctcaatttggatatcaatgcagtttctaacaattcgcttacaccacaacaaattcgagaggttgctgcaaattttgc |
48653993 |
T |
|
| Q |
321 |
taacaaaaatccaccaattattgataataataataatggaaataatagtaatgttcaatccaatatggtgacggaaat |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48653992 |
taacaaaaatccaccaattattgataataataataatggaaataatagtaatgttcaatccaatatggtgacggaaat |
48653915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 245 - 387
Target Start/End: Complemental strand, 8146150 - 8145999
Alignment:
| Q |
245 |
tcaatttggatatcaatgcagtttctaacaattcacttacaccacaacaaattcgagaggttgctgcaaattttgctaacaaaaatccaccaattattga |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8146150 |
tcaatttggatatcaatgcagtttctaacaattcacttataccacaacaaattcgagaggttgctgcaaattttgctaacaaaaacccaccaattattga |
8146051 |
T |
|
| Q |
345 |
taata------ataataatggaaataata---gtaatgttcaatccaatatg |
387 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||| |
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|
| T |
8146050 |
taataataacaataataatggaaataataatggtaatgttcaatccaatatg |
8145999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 287 - 359
Target Start/End: Complemental strand, 30545273 - 30545201
Alignment:
| Q |
287 |
cacaacaaattcgagaggttgctgcaaattttgctaacaaaaatccaccaattattgataataataataatgg |
359 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
30545273 |
cacaacaaattcaagaggttgctgcaaattttgctaacaaaaacccaccaattattgataataataataatgg |
30545201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 44154487 - 44154554
Alignment:
| Q |
287 |
cacaacaaattcgagaggttgctgcaaattttgctaacaaaaatccaccaattattgataataataat |
354 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44154487 |
cacaacaaattcaagaggttgctgcaaattttgctaacaaaaacccaccaattattgataataataat |
44154554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 245 - 353
Target Start/End: Complemental strand, 48569990 - 48569882
Alignment:
| Q |
245 |
tcaatttggatatcaatgcagtttctaacaattcacttacaccacaacaaattcgagaggttgctgcaaattttgctaacaaaaatccaccaattattga |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||| |
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| T |
48569990 |
tcaatttggatatcaatgcagtttctaacaattcacttataccacaacaaattcgagaggttgctgtaaattttgctaacaaaaacccacaaattattga |
48569891 |
T |
|
| Q |
345 |
taataataa |
353 |
Q |
| |
|
||||||||| |
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|
| T |
48569890 |
taataataa |
48569882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 81 - 243
Target Start/End: Original strand, 3573750 - 3573912
Alignment:
| Q |
81 |
gagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagca |
180 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| || || |||||||||| ||| |
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|
| T |
3573750 |
gagaaaatggggaaaatgggtatctgaaattaggcttccaaatagtcgtgagagaatatggttaggatcatatgacacacaagaaaaagcagctagggca |
3573849 |
T |
|
| Q |
181 |
tttgatgctgcactttattgtcttcgcggtcgtcatgcaaatttcaatttccttgatacacct |
243 |
Q |
| |
|
|||||||| || || |||||||| || |||| |||||||| ||||||||||| | |||||||| |
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|
| T |
3573850 |
tttgatgcagccctatattgtctacgtggtcctcatgcaagtttcaatttccctaatacacct |
3573912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 81 - 245
Target Start/End: Original strand, 3551332 - 3551496
Alignment:
| Q |
81 |
gagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagca |
180 |
Q |
| |
|
|||||| |||||||||||||||||||| || ||||| ||||||||| | || ||||||||||||||||||||||| || ||||||||||| | |||| |
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| T |
3551332 |
gagaaattggggaaaatgggtatctgagattaggcttccaaatagtagggagagaatatggttaggatcatatgacacacaagagaaagcagcaagagca |
3551431 |
T |
|
| Q |
181 |
tttgatgctgcactttattgtcttcgcggtcgtcatgcaaatttcaatttccttgatacacctct |
245 |
Q |
| |
|
|||||||| || ||||||||||| || |||| |||||||| ||||||||||| | | |||||||| |
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|
| T |
3551432 |
tttgatgcagccctttattgtctacgtggtcctcatgcaagtttcaatttccctaacacacctct |
3551496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 81 - 245
Target Start/End: Original strand, 3589042 - 3589206
Alignment:
| Q |
81 |
gagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagca |
180 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||||||||| | || ||||||||||||||||||||||| || || |||||||||| ||| |
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|
| T |
3589042 |
gagaaaatggggaaaatgggtatctgaaattaggcttccaaatagtagggagagaatatggttaggatcatatgacacacaagaaaaagcagctagggca |
3589141 |
T |
|
| Q |
181 |
tttgatgctgcactttattgtcttcgcggtcgtcatgcaaatttcaatttccttgatacacctct |
245 |
Q |
| |
|
|||||||| || || |||||||| || |||| |||||||| ||||||||||| | | |||||||| |
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|
| T |
3589142 |
tttgatgcagccctatattgtctacgtggtcctcatgcaagtttcaatttccctaacacacctct |
3589206 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 3562483 - 3562670
Alignment:
| Q |
58 |
aagaagtacaaaggtgtgagattgagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgatt |
157 |
Q |
| |
|
|||| ||||||||| ||||| |||||| ||||||||||||||||||||||| ||||| ||||||||| | || ||||||||||||||||||||||| |
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|
| T |
3562483 |
aagatgtacaaaggggtgaggaagagaaaatggggaaaatgggtatctgaaattaggcttccaaatagtagggagagaatatggttaggatcatatgaca |
3562582 |
T |
|
| Q |
158 |
cagctgagaaagcagctaaagcatttgatgctgcactttattgtcttcgcggtcgtcatgcaaatttcaatttccttgatacacctct |
245 |
Q |
| |
|
|| || |||||||||| ||||||||||| || || |||||||| || |||| |||||| | ||||||||||| | | |||||||| |
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|
| T |
3562583 |
cacaagaaaaagcagctagggcatttgatgcagccctatattgtctacgtggtcctcatgctagtttcaatttccctaacacacctct |
3562670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 92 - 245
Target Start/End: Original strand, 10025200 - 10025353
Alignment:
| Q |
92 |
gaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagcatttgatgctgc |
191 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| |||| || || |||||||||| |||||||||||| || |
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|
| T |
10025200 |
gaaaatgggtatctgaaattaggcttccaaatagtcgtgagagaatatggttaggatcacatgacacacaagaaaaagcagctagagcatttgatgcagc |
10025299 |
T |
|
| Q |
192 |
actttattgtcttcgcggtcgtcatgcaaatttcaatttccttgatacacctct |
245 |
Q |
| |
|
|| |||||||| || |||| |||||| | ||||||||||| | |||||||||| |
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|
| T |
10025300 |
cctatattgtctacgtggtcctcatgctagtttcaatttccctaatacacctct |
10025353 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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