View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2871_low_4 (Length: 401)
Name: NF2871_low_4
Description: NF2871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2871_low_4 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 5 - 383
Target Start/End: Complemental strand, 27765936 - 27765558
Alignment:
| Q |
5 |
gagagagaagaaagatgatttgcaaatataaagtagtggtagagatttccaaaccctaacaaattgatagaaattagagaaaaatagtgagagaaggggg |
104 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27765936 |
gagagaaaagaaagatgatttgcaaatataaagtagtagtagagatttccaaaccctaacaaattgatagaaattagagaaaaatagtgagagaaggggg |
27765837 |
T |
|
| Q |
105 |
tacctaaatttgattcaagaaattccatcccaaccatcgtactccaatcctcacaatttcatcaaaataaacttcaccgattttcttgagaaagttataa |
204 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27765836 |
tacctaaaattgattcaagaaattccatcccaaccatcgtacttcaatcctcacaatttcatcaaaataaacttcaccgattttcttaagaaagttataa |
27765737 |
T |
|
| Q |
205 |
gtttacctatttacaatccggtttgcataaccaaatgaacagcaagcaagacacgacacataaggtacttcatcgctttctcagaaagaagaaggagtta |
304 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||| |
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| T |
27765736 |
gttcacctatttacaatccggtttgcataaccaaatgaacagcaagcaagacacgacacgtgaggtacttcatcgctctctcagaaagaagaaggagtta |
27765637 |
T |
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| Q |
305 |
gaggaggaaagagtttggcattgaaaacataagagtgaatgggaatagcaaaaaagttgagagattggggagatagaga |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27765636 |
gaggaggaaagagtttggcattgaaaacataagagtgaatgggaatagcaaaaaagttgagagattggggagatagaga |
27765558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 5 - 383
Target Start/End: Complemental strand, 12870772 - 12870395
Alignment:
| Q |
5 |
gagagagaagaaagatgatttgcaaatataaagtagtggtagagatttccaaaccctaacaaattgatagaaattagagaaaaatagtgagagaaggggg |
104 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12870772 |
gagagaaaagaaagatgatttgcaaatataaagtagtggtagagatttctaaaccctaacaaattgatagaaattagagaaaaatagtgagagaagggg- |
12870674 |
T |
|
| Q |
105 |
tacctaaatttgattcaagaaattccatcccaaccatcgtactccaatcctcacaatttcatcaaaataaacttcaccgattttcttgagaaagttataa |
204 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
12870673 |
tacctaaaattgattcaagaaattccatcccaacaatcgtactccaatcctcacaatttcatcaaaataaacttcaccgattttcttgagaaagttacaa |
12870574 |
T |
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| Q |
205 |
gtttacctatttacaatccggtttgcataaccaaatgaacagcaagcaagacacgacacataaggtacttcatcgctttctcagaaagaagaaggagtta |
304 |
Q |
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||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||| |
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| T |
12870573 |
gttcaccgatttacaatccggtttgcataaccaaatgaacagcaagcaagacacgacacatgaggtacttcatcgctctctcagaaaaaagaaggagtta |
12870474 |
T |
|
| Q |
305 |
gaggaggaaagagtttggcattgaaaacataagagtgaatgggaatagcaaaaaagttgagagattggggagatagaga |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12870473 |
gaggaggaaagagtttggcattgaaaacataagagtgaatgggaatagcaaaaaagttgagagattggggagatagaga |
12870395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 31770374 - 31770520
Alignment:
| Q |
12 |
aagaaagatgatttgcaaatataaagtagtggtagagatttccaaaccctaacaaattgatagaaattagagaaaaatagtgagagaagggggtacctaa |
111 |
Q |
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|||||| ||| |||||||| ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| || | |||||||| |
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| T |
31770374 |
aagaaaaatgttttgcaaagataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaaatagtgagag-agtgagtacctaa |
31770472 |
T |
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| Q |
112 |
atttgattcaagaaattccatcccaaccatcgtactccaatcctcaca |
159 |
Q |
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| T |
31770473 |
aactgatgcaaaatattcaatctgaaccatcgtactccaatcctcaca |
31770520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 7607814 - 7607899
Alignment:
| Q |
12 |
aagaaagatgatttgcaaatataaagtagtggtagagatttccaaaccctaacaaattgatagaaattagagaaaaatagtgagag |
97 |
Q |
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|||||| ||| |||||||| ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7607814 |
aagaaaaatgttttgcaaagataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaaatagtgagag |
7607899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 41810939 - 41810794
Alignment:
| Q |
13 |
agaaagatgatttgcaaatataaagtagtggtagagatttccaaaccctaacaaattgatagaaattagagaaaaatagtgagagaagggggtacctaaa |
112 |
Q |
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||||| ||| |||||||| ||||||| ||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| || | ||||||||| |
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| T |
41810939 |
agaaaaatgttttgcaaagataaagtggtgttagagatttctaaaccttaacaaattgatagaaattagagaaaaatagtgagag-agtgagtacctaaa |
41810841 |
T |
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| Q |
113 |
tttgattcaagaaattccatcccaaccatcgtactccaatcctcaca |
159 |
Q |
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|||| ||| | |||| ||| |||||||||||||||||||||||| |
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| T |
41810840 |
actgatgcaaaatattcaatctgaaccatcgtactccaatcctcaca |
41810794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 28643 - 28513
Alignment:
| Q |
23 |
tttgcaaatataaagtagtggtagagatttccaaaccctaacaaattgatagaaattagagaaaaatagtgagagaagggggtacctaaatttgattcaa |
122 |
Q |
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|||||||| ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| ||| |
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| T |
28643 |
tttgcaaagataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaaatagtgagag-agggagtacctaaaactgatacaa |
28545 |
T |
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| Q |
123 |
gaaattccatcccaaccatcgtactccaatcct |
155 |
Q |
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| T |
28544 |
aatattccatctgaaccat-gtactccaatcct |
28513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 12537921 - 12538069
Alignment:
| Q |
5 |
gagagagaagaaagatgatttgcaaatataaagtagtggtagagatttccaaaccctaacaaattgatagaaattagagaaaaatagtgagagaaggggg |
104 |
Q |
| |
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|||||| || ||| ||| |||||||| ||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| | || | |
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| T |
12537921 |
gagagaaaaaaaaaatgttttgcaaagataaagttgtggtggagatttctaaaccttaacaaattgatagaaattagagaaaaatagtgagag-atggag |
12538019 |
T |
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| Q |
105 |
tacctaaatttgattcaagaaattccatcccaaccatcgtactccaatcct |
155 |
Q |
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|||||||| |||| ||| | |||||||| |||||| ||||||||||||| |
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| T |
12538020 |
tacctaaaactgatacaaaatattccatctaaaccat-gtactccaatcct |
12538069 |
T |
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