View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2872_high_11 (Length: 249)
Name: NF2872_high_11
Description: NF2872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2872_high_11 |
 | |
|
| [»] chr3 (7 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 26690032 - 26690273
Alignment:
| Q |
8 |
cgaagaatatggaccaatgaagttcatgctttggtttacttctggcttaggggtaattgaggccttttgcttctttatgatatggtggttcttatttaag |
107 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26690032 |
cgaagaaaatggaccaatgaagttcatgctttggtttacttctggcttaggggtaattgaggccttgtgcttctttatgatatggtggttcttatttaag |
26690131 |
T |
|
| Q |
108 |
aataagaagcactttgttagagataatcaaggctacattcttgcaggagcaagatttcgaaaattcacttactcggaactaaaacttgcaacaaaatgtt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26690132 |
aataagaagcactttgttagagataatcaaggctacgttcttgcaggagcaagatttcgaaaattcacttactcggaactaaaacttgcaacaaaatgtt |
26690231 |
T |
|
| Q |
208 |
ttagtcaagagattggaaatggtgctggaggaactgtgtata |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26690232 |
ttagtcaagagattggaaatggtgctggaggaactgtgtata |
26690273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 26694192 - 26694434
Alignment:
| Q |
10 |
aagaatatggaccaatgaagttcatgctttggtttacttctggcttaggggtaattgaggccttttgcttctttatgatatggtggttcttatttaagaa |
109 |
Q |
| |
|
||||| ||||| || ||||| | || ||||||||| | ||||||||||||||||||||||| | || || ||||||||||||| |||||||||||||| |
|
|
| T |
26694192 |
aagaaaatggatcagtgaagattatcctttggtttgcgtctggcttaggggtaattgaggcgctatgtttttttatgatatggttcttcttatttaagaa |
26694291 |
T |
|
| Q |
110 |
taagaagcactttgttagagataatcaaggctacattcttgcaggagcaa---gatttcgaaaattcacttactcggaactaaaacttgcaacaaaatgt |
206 |
Q |
| |
|
|| |||||||||||| |||||||||||||||| ||||||||||||| | |||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26694292 |
tagcgagcactttgttatagataatcaaggctacgttcttgcaggagctacaggatttcaaaaattcacttactcggaactaaaacaagcaacaaaatgt |
26694391 |
T |
|
| Q |
207 |
tttagtcaagagattggaaatggtgctggaggaactgtgtata |
249 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26694392 |
tttagtcaagagattggaaagggtgctggaggaactgtgtata |
26694434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 112 - 249
Target Start/End: Original strand, 26731447 - 26731584
Alignment:
| Q |
112 |
agaagcactttgttagagataatcaaggctacattcttgcaggagcaagatttcgaaaattcacttactcggaactaaaacttgcaacaaaatgttttag |
211 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26731447 |
agaagcactttcttagagataatcaaggctacgttcttgcaggagcaagatttcgaaaattcacttattcggaactaaaacttgcaacaaaatgttttag |
26731546 |
T |
|
| Q |
212 |
tcaagagattggaaatggtgctggaggaactgtgtata |
249 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26731547 |
tcaagagattggaagtggtgctggaggaactgtgtata |
26731584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 249
Target Start/End: Complemental strand, 26676026 - 26675808
Alignment:
| Q |
34 |
tgctttggtttacttctggcttaggggtaattgaggccttttgcttctttatgatatggtggttcttatttaagaataagaagcactttgttagagataa |
133 |
Q |
| |
|
||||||||||| | || |||| || |||||||||| || ||||||||||| |||| |||||||||||||||| |||||||| | || | |||| |
|
|
| T |
26676026 |
tgctttggtttgcgacttgcttgggagtaattgaggtattgtgcttctttattgcggggtgcttcttatttaagaataggaagcactccgctacaaataa |
26675927 |
T |
|
| Q |
134 |
tcaaggctacattcttgcaggagcaa---gatttcgaaaattcacttactcggaactaaaacttgcaacaaaatgttttagtcaagagattggaaatggt |
230 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||||| |||||| ||| | |||| ||||||||| |||| ||||||||||||||||| ||| |
|
|
| T |
26675926 |
acaaggctacattcttgcaatagcccctggatttcgggaattcagttactctgaattgaaacaagcaacaaaaggtttcagtcaagagattggaaagggt |
26675827 |
T |
|
| Q |
231 |
gctggaggaactgtgtata |
249 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
26675826 |
gctggaggaactgtatata |
26675808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 249
Target Start/End: Complemental strand, 26744506 - 26744425
Alignment:
| Q |
168 |
aaattcacttactcggaactaaaacttgcaacaaaatgttttagtcaagagattggaaatggtgctggaggaactgtgtata |
249 |
Q |
| |
|
|||||||| ||||| |||||||||| ||||||||| ||| ||||||||||||||||| |||||| | ||||||||||||| |
|
|
| T |
26744506 |
aaattcacctactctgaactaaaacatgcaacaaagaatttcagtcaagagattggaaagggtgcttgtggaactgtgtata |
26744425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 249
Target Start/End: Complemental strand, 26751431 - 26751350
Alignment:
| Q |
168 |
aaattcacttactcggaactaaaacttgcaacaaaatgttttagtcaagagattggaaatggtgctggaggaactgtgtata |
249 |
Q |
| |
|
||||||| |||||| ||| | |||| || |||||| |||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
26751431 |
aaattcagttactctgaattgaaacaagctacaaaaggttttagtcaagagatcggaagaggtgctggaggaactgtgtata |
26751350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 26744655 - 26744562
Alignment:
| Q |
25 |
tgaagttcatgctttggtttacttctggcttaggggtaattgaggccttttgcttctttatgatatggtggttcttatttaagaataagaagca |
118 |
Q |
| |
|
|||||||||||||||||||| | |||||| || | ||||||| ||| |||||||||||| ||||||| |||||||| ||||| | |||||| |
|
|
| T |
26744655 |
tgaagttcatgctttggtttgcaagtggcttgggaggaattgagttcttctgcttctttatggtatggtgtttcttattaaagaacaggaagca |
26744562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University