View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2872_low_1 (Length: 692)
Name: NF2872_low_1
Description: NF2872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2872_low_1 |
 | |
|
| [»] scaffold0171 (1 HSPs) |
| | |
|
| [»] scaffold0884 (1 HSPs) |
| | |
|
| [»] scaffold0855 (1 HSPs) |
| | |
|
| [»] scaffold0847 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 551; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 17 - 674
Target Start/End: Original strand, 9354198 - 9354846
Alignment:
| Q |
17 |
acctgtggagaacgataaacgtactactttaatacttgttacaatttggtgt------caatttcgtccatcaattgccattaaagattttcttagcaac |
110 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9354198 |
acctatggagaacgataaacgtacaactttaatacttgttacaatttggtgtactccccaatttcgtccatcaattgccattaaagattttcttagcaac |
9354297 |
T |
|
| Q |
111 |
tttcaacgaaaatcaagatttaaaattttgcaaaataatagaatcatttactttagttcataatgttacgttggtagattgactgaaacataacctaccg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9354298 |
tttcaacgaaaatcaagatttaaaattttgcaaaataatagaatcatttactttagttcataat---------------tgactgaaacataacctaccg |
9354382 |
T |
|
| Q |
211 |
gcattagtaaattatgtagtagttgtaatgagttattgtttgatacgactaacttcaaagtcctcaatccctttgataagtccatattcttcattggaaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9354383 |
gcattagtaaattatgtagtagttgtaatgagttagtgtttgatacgactaacttcaaagtcctcaatccctttgataagtccatattcttcattggaaa |
9354482 |
T |
|
| Q |
311 |
gaggaaattcaatgtttatcaaataattttctctaattttgctaaccaaaaaggttgttcttcttttgttaatgaataatgaaaaataggtatggcacaa |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9354483 |
gaggaaattcaatgtttatcaaataattttctctaattttgctaagcaaaaaggttgtttttcttttgttaatgaataatgaaaaatgggtatggcacaa |
9354582 |
T |
|
| Q |
411 |
acgtttgggtcatgttagttggagattaatccataaacttaggaagctaaaacttcttagaggattaatccagatattataagtatcatttagatgccct |
510 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9354583 |
acgtgtgggtcatgttagttggagattaatccataaacttaggaagctaaaacttgttagaggattaatccagatattataagtatcatttagatgccct |
9354682 |
T |
|
| Q |
511 |
gtttagagcacaccgaaaagaagaaaaaattaaatcatcctttaactctaagaacattgtataaaccttcagatctctagaacttctacgcattgatatg |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9354683 |
gtttagagcacaccgaaaagaagaaaaaattaaatcaacctttaactctaagaacattgtataaaccttcagatctctagaacttctacacattgatatg |
9354782 |
T |
|
| Q |
611 |
tttgggccagtcagtacaacctcaatcagtggaaagaagtatgaacaagtcatagttgatgact |
674 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9354783 |
tttgggccagtcagtacaacctcaatcagtggaaagaagtatgaacaagtcatagttgatgact |
9354846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 20 - 674
Target Start/End: Original strand, 9329239 - 9329897
Alignment:
| Q |
20 |
tgtggagaacgataaacgtactactttaatacttgttacaatttggtgt------caatttcgtccatcaattgccattaaagattttcttagcaacttt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9329239 |
tgtggagaacgataaacgtactactttaatacttgttacaatttagtgtactctccaatttcgtccatcaattgccattaaagattttcttagcaacttt |
9329338 |
T |
|
| Q |
114 |
caacgaaaatcaagatttaaaattttgcaaaat-aatagaatcatttactttagttcataatgttacgttggtagattgactgaaacataacctaccggc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9329339 |
caacgaaaatcaagatttaaaattttgcaaaaacaatagaatcatttactttagttcataatgttacgttggtagattgactgaaacataacctaccggc |
9329438 |
T |
|
| Q |
213 |
attagtaaattatgtagtagttgtaatgagttattgtttgatacgactaacttcaaagtcctcaatccctttgataagtccatattcttcattggaaaga |
312 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9329439 |
attagtaaattatgtggtagttgtaatgaggtagtgtttgatacgactaacttcaaagtcctcaatccctttgataagtccatattcttcattggaaaga |
9329538 |
T |
|
| Q |
313 |
ggaaattcaatgtttatcaaataattttctctaattttgctaaccaaaaaggttgttcttcttttgttaatgaataatgaaaaataggtatggcacaaac |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
9329539 |
ggaaattcaatgtttatcaaataattttctctaattttgctaaacaaaaaggttgtttttcttttgttaatgaatgatgaaaaatgggtatggcacaaac |
9329638 |
T |
|
| Q |
413 |
gtttgggtcatgttagttggagattaatccataaacttaggaagctaaaacttcttagaggattaatccagatattataagtatcatttagatgccctgt |
512 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9329639 |
gtgtgggtcatgttagttggaaattaatccataaacttaggaagctaaaacttgttagaggattaatccagatat--taagtatcatttagatgccctgt |
9329736 |
T |
|
| Q |
513 |
ttagagcacaccgaaaagaagaaaaaattaaatcatcctttaactctaagaacattgtataaaccttcagatctctagaacttctacgcattgatatgtt |
612 |
Q |
| |
|
||||||||| || ||||||| ||| | |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
9329737 |
ttagagcacgccaaaaagaa-aaatatttaaatcatcctttaactctaaaaacattgtataaacattcagatctctagaacttctacacattgatatgtt |
9329835 |
T |
|
| Q |
613 |
tgggccagtcagtacaacctcaatcagtggaaagaagtatgaacaagtcatagttgatgact |
674 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9329836 |
tgggccagtcagtacaacctcaatcagtggaaagaaatatgaacaagtcatagttgatgact |
9329897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 215 - 674
Target Start/End: Complemental strand, 9251116 - 9250665
Alignment:
| Q |
215 |
tagtaaattatgtagtagttgtaatgagttattgtttgatacgactaacttcaaagtcctcaatccctttgataagtccatattcttcattggaaagagg |
314 |
Q |
| |
|
||||||||||||| ||||||||||||| || |||||||||||||||||||||||||| ||||||||| || |||||||||||||||| ||||||||||| |
|
|
| T |
9251116 |
tagtaaattatgtgatagttgtaatgaggtagtgtttgatacgactaacttcaaagtcatcaatccctctgttaagtccatattcttctttggaaagagg |
9251017 |
T |
|
| Q |
315 |
aaattcaatgtttatcaaataattttctctaattttgctaaccaaaaaggttgttcttcttttgttaatgaataatgaaaaataggtatggcacaaacgt |
414 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||| ||||| ||||||| ||||| ||| ||||||||||||| |||||||| |||| |||||||| |
|
|
| T |
9251016 |
aaattcaatgtttatcaaataa-tttctctgatttggctaaacaaaaagattgtttttcctttgttaatgaatggtgaaaaatgggta---cacaaacgg |
9250921 |
T |
|
| Q |
415 |
ttgggtcatgttagttggagattaatccataaacttaggaagctaaaacttcttagaggattaatccagatattataagtatcatttagatgccctgttt |
514 |
Q |
| |
|
|||| | ||| ||||||||||||||||||||||||||| |||||||||||| ||| ||| || ||||||| |||||||||||||| |||||| |
|
|
| T |
9250920 |
ttggattatgctagttggagattaatccataaacttagcaagctaaaacttgttaaaggccta----cgatattaagtatatcatttagatgctctgttt |
9250825 |
T |
|
| Q |
515 |
agagcacaccgaaaagaagaaaaaattaaatcatcctttaactctaagaacattgtataaaccttcagatctctagaacttctacgcattgatatgtttg |
614 |
Q |
| |
|
|||||| | ||||| | | | ||||||| || ||||| ||||| ||||| |||| |||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
9250824 |
agagcatgtcaaaaaggaaatatttttaaatcttcgtttaagtctaaaaacatagtatgaaccttaagatctctagaacttctacacattgatatgtttg |
9250725 |
T |
|
| Q |
615 |
ggccagtcagtacaacctcaatcagtggaaagaagtatgaacaagtcatagttgatgact |
674 |
Q |
| |
|
||||||||| |||||||| |||||||||||| |||||||||| |||||||||| |||||| |
|
|
| T |
9250724 |
ggccagtcaatacaaccttaatcagtggaaaaaagtatgaactagtcatagttcatgact |
9250665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 9251312 - 9251239
Alignment:
| Q |
154 |
tcatttactttagttcataatgttacgttggtagattgactgaaacataacctaccggcattagtaaattatgt |
227 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9251312 |
tcatttactttagttcgtaatgttatgttggtagattgactgaaacataacctactggcattagtaaattatgt |
9251239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 9251585 - 9251503
Alignment:
| Q |
66 |
tgtcaatttcgtccatcaattgccattaaagattttcttagcaactttcaacgaaaatc---aagatttaaaattttgcaaaa |
145 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
9251585 |
tgtcaattttgtccatcaattgccattaaagatttgcttagtaactttcaaagaaaatcaagaagatttaaaattttgcaaaa |
9251503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 50048239 - 50048285
Alignment:
| Q |
18 |
cctgtggagaacgataaacgtactactttaatacttgttacaatttg |
64 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||| |||||| |
|
|
| T |
50048239 |
cctgtggagaacgataaacttactactttattacttgttataatttg |
50048285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 34522115 - 34522162
Alignment:
| Q |
20 |
tgtggagaacgataaacgtactactttaatacttgttacaatttggtg |
67 |
Q |
| |
|
||||||||||||||||| ||||| |||| |||||||||| |||||||| |
|
|
| T |
34522115 |
tgtggagaacgataaacttactattttattacttgttacgatttggtg |
34522162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 7349 - 7399
Alignment:
| Q |
17 |
acctgtggagaacgataaacgtactactttaatacttgttacaatttggtg |
67 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||| |||||||| |
|
|
| T |
7349 |
acctgtggagaacgataaacttactactttattacttgttacgatttggtg |
7399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 32240443 - 32240488
Alignment:
| Q |
22 |
tggagaacgataaacgtactactttaatacttgttacaatttggtg |
67 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
32240443 |
tggagaacgataaacttactactttattacttgttacaatttggtg |
32240488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 26853601 - 26853650
Alignment:
| Q |
18 |
cctgtggagaacgataaacgtactactttaatacttgttacaatttggtg |
67 |
Q |
| |
|
||||||||||||||| ||| |||||||||| |||||||||| |||||||| |
|
|
| T |
26853601 |
cctgtggagaacgatgaacttactactttattacttgttacgatttggtg |
26853650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 20469647 - 20469603
Alignment:
| Q |
22 |
tggagaacgataaacgtactactttaatacttgttacaatttggt |
66 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
20469647 |
tggagaacgataaacttactactttattacttgttacaatttggt |
20469603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 21544749 - 21544702
Alignment:
| Q |
20 |
tgtggagaacgataaacgtactactttaatacttgttacaatttggtg |
67 |
Q |
| |
|
||||||||||| ||||| |||||||||| |||||||||| |||||||| |
|
|
| T |
21544749 |
tgtggagaacggtaaacttactactttattacttgttacgatttggtg |
21544702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 7494484 - 7494533
Alignment:
| Q |
18 |
cctgtggagaacgataaacgtactactttaatacttgttacaatttggtg |
67 |
Q |
| |
|
||||||||||| ||||||| ||||| |||| |||||||||| |||||||| |
|
|
| T |
7494484 |
cctgtggagaatgataaacttactaatttattacttgttacgatttggtg |
7494533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 7776422 - 7776373
Alignment:
| Q |
18 |
cctgtggagaacgataaacgtactactttaatacttgttacaatttggtg |
67 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
7776422 |
cctgtggagaacgataaacttactactttgttacttgttaagatttggtg |
7776373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 9121095 - 9121050
Alignment:
| Q |
20 |
tgtggagaacgataaacgtactactttaatacttgttacaatttgg |
65 |
Q |
| |
|
||||||||||||||||| |||||| ||| |||||||||| |||||| |
|
|
| T |
9121095 |
tgtggagaacgataaacttactaccttattacttgttacgatttgg |
9121050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 18494626 - 18494577
Alignment:
| Q |
18 |
cctgtggagaacgataaacgtactactttaatacttgttacaatttggtg |
67 |
Q |
| |
|
|||||||||||| |||||| |||||| ||| |||||||||| |||||||| |
|
|
| T |
18494626 |
cctgtggagaacaataaacttactaccttattacttgttacgatttggtg |
18494577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 31000597 - 31000643
Alignment:
| Q |
18 |
cctgtggagaacgataaacgtactactttaatacttgttacaatttg |
64 |
Q |
| |
|
||||||||||| ||||||| |||||||||| |||||||||||||||| |
|
|
| T |
31000597 |
cctgtggagaatgataaacttactactttattacttgttacaatttg |
31000643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 28455196 - 28455148
Alignment:
| Q |
20 |
tgtggagaacgataaacgtactactttaatacttgttacaatttggtgt |
68 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
28455196 |
tgtggagaaccataaacttactactttaatacttgttatgatttggtgt |
28455148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0884 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0884
Description:
Target: scaffold0884; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 465
Target Start/End: Complemental strand, 2876 - 2792
Alignment:
| Q |
381 |
aatgaataatgaaaaataggtatggcacaaacgtttgggtcatgttagttggagattaatccataaacttaggaagctaaaactt |
465 |
Q |
| |
|
||||||| ||||||||| | ||||||| | |||||| || |||| ||||||||||||| || ||||||||| ||| |||||||| |
|
|
| T |
2876 |
aatgaatgatgaaaaatggttatggcatatacgtttaggacatgctagttggagattattctataaacttatcaagttaaaactt |
2792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 11273749 - 11273709
Alignment:
| Q |
24 |
gagaacgataaacgtactactttaatacttgttacaatttg |
64 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
11273749 |
gagaacgataaacttactactttattacttgttacaatttg |
11273709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 20715828 - 20715877
Alignment:
| Q |
18 |
cctgtggagaacgataaacgtactactttaatacttgttacaatttggtg |
67 |
Q |
| |
|
|||| |||||||||||||| |||||| ||| ||||| ||||||||||||| |
|
|
| T |
20715828 |
cctgcggagaacgataaacttactaccttattacttattacaatttggtg |
20715877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 17768641 - 17768689
Alignment:
| Q |
18 |
cctgtggagaacgataaacgtactactttaatacttgttacaatttggt |
66 |
Q |
| |
|
|||||||||||| |||||| |||||||||| ||||| |||| ||||||| |
|
|
| T |
17768641 |
cctgtggagaacaataaacttactactttattacttcttacgatttggt |
17768689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 24580004 - 24580051
Alignment:
| Q |
20 |
tgtggagaacgataaacgtactactttaatacttgttacaatttggtg |
67 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||| |||||||| |
|
|
| T |
24580004 |
tgtggagaacgataaactaactactttattacttgttacgatttggtg |
24580051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 12840767 - 12840729
Alignment:
| Q |
20 |
tgtggagaacgataaacgtactactttaatacttgttac |
58 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
12840767 |
tgtggcgaacgataaacttactactttaatacttgttac |
12840729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 33913462 - 33913419
Alignment:
| Q |
24 |
gagaacgataaacgtactactttaatacttgttacaatttggtg |
67 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
33913462 |
gagaacgataaatttactactttattacttgttacaatttggtg |
33913419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0855 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0855
Description:
Target: scaffold0855; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 2082 - 2037
Alignment:
| Q |
22 |
tggagaacgataaacgtactactttaatacttgttacaatttggtg |
67 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||| |||||||| |
|
|
| T |
2082 |
tggagaacgataaatttactactttaatatttgttacgatttggtg |
2037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0847 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0847
Description:
Target: scaffold0847; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 2247 - 2202
Alignment:
| Q |
22 |
tggagaacgataaacgtactactttaatacttgttacaatttggtg |
67 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||| |||||||| |
|
|
| T |
2247 |
tggagaacgataaatttactactttaatatttgttacgatttggtg |
2202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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