View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2872_low_10 (Length: 284)
Name: NF2872_low_10
Description: NF2872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2872_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 5 - 269
Target Start/End: Original strand, 37096684 - 37096948
Alignment:
| Q |
5 |
cagattaaagattacagtaacatacattaattaatatatattgtaccttcacaacctaggtaattttaaaatggatagggttttactgaataaggtgaga |
104 |
Q |
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| T |
37096684 |
cagattaaagattacagtaacatacattaattaatatatattgtaccttcacaacctaggtaattttaaaatggatagggttttactgaataaggtgaga |
37096783 |
T |
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| Q |
105 |
ggattaatgttctaaagaagcataggcatggcatccatagggaatggcttgcacatgacattttccatgtagtaatttgtggcatccatcacagcaaatt |
204 |
Q |
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| T |
37096784 |
ggattaatgttctaaagaagcataggcatggcatccatagggaatggcttgcacatgacattttccatgtagtaatttgtggcatccatcacagcaaatt |
37096883 |
T |
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| Q |
205 |
gcatatcctcagaaggcttccagtgacgttttctctgattaatgaaccaattgctgatctgcttc |
269 |
Q |
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| T |
37096884 |
gcatatcctcagaaggcttccagtgacgttttctctgattaatgaaccaattgttgatctgcttc |
37096948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 14552742 - 14552660
Alignment:
| Q |
189 |
tccatcacagcaaattgcatatcctcagaaggcttccagtgacgttttctctgattaatgaaccaattgctgatctgcttctg |
271 |
Q |
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| T |
14552742 |
tccatcatagaaaactgcatattctcagatggtttccaatgacgttttctttgattaataaaccaattgttaatttgcttctg |
14552660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 273
Target Start/End: Original strand, 8791891 - 8791976
Alignment:
| Q |
188 |
atccatcacagcaaattgcatatcctcagaaggcttccagtgacgttttctctgattaatgaaccaattgctgatctgcttctgat |
273 |
Q |
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| T |
8791891 |
atccatcaccacaaactgcatgtcctctgaaggcttccagtgccgtttcctttgattaataaaccagttgtttatttgcttctgat |
8791976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 8780396 - 8780452
Alignment:
| Q |
188 |
atccatcacagcaaattgcatatcctcagaaggcttccagtgacgttttctctgatt |
244 |
Q |
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| T |
8780396 |
atccatcaccacaaactgcatgtcctctgaaggcttccagtgccgttttctttgatt |
8780452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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