View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2872_low_14 (Length: 242)

Name: NF2872_low_14
Description: NF2872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2872_low_14
NF2872_low_14
[»] chr6 (4 HSPs)
chr6 (1-226)||(13609655-13609880)
chr6 (1-65)||(31561334-31561398)
chr6 (1-65)||(33305977-33306041)
chr6 (1-65)||(33389563-33389627)
[»] chr4 (7 HSPs)
chr4 (1-226)||(31245604-31245829)
chr4 (1-59)||(31019291-31019349)
chr4 (1-65)||(31029166-31029230)
chr4 (1-71)||(31527888-31527958)
chr4 (1-71)||(31033496-31033565)
chr4 (1-53)||(31477496-31477548)
chr4 (1-59)||(31158740-31158798)
[»] chr7 (1 HSPs)
chr7 (38-161)||(14724899-14725022)
[»] chr5 (1 HSPs)
chr5 (38-161)||(17598740-17598863)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 13609655 - 13609880
Alignment:
Q  1 ttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagagagaatcccatggcagaaattatggatgtactacggc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13609655 ttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagagagaatcccatggcagaaattatggatgtactacggc 13609754  T
Q  101 ttagttatgatggactaaaggatatagaaaaggagatttttctggatattgcttgtttctttgatgnnnnnnnnnnnncatacgtgaagaaagttttaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||    
T  13609755 ttagttatgatggactaaaggatatagaaaaggagatttttctggatattgcttgtttctttgatagagagagcgagacatacgtgaagaaagttttaga 13609854  T
Q  201 ttttcgtggatttcatcccgaaattg 226  Q
    ||||||||||||||||||||||||||    
T  13609855 ttttcgtggatttcatcccgaaattg 13609880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 31561334 - 31561398
Alignment:
Q  1 ttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagaga 65  Q
    |||||||||||||||| ||||||  ||||  |||||||||  ||||||||| ||||||| |||||    
T  31561334 ttgggctcatttttgtttggtcgtaatgtgactgaatggaagagtgcattgtccagattgagaga 31561398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33306041 - 33305977
Alignment:
Q  1 ttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagaga 65  Q
    |||||||||||||||| ||||||  ||||  |||||||||  ||||||||||| ||||| |||||    
T  33306041 ttgggctcatttttgtttggtcgtaatgtgactgaatggaagagtgcattggctagattgagaga 33305977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33389627 - 33389563
Alignment:
Q  1 ttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagaga 65  Q
    |||||||||||||||| ||||||  ||||  |||||||||  ||||||||||| ||||| |||||    
T  33389627 ttgggctcatttttgtttggtcgtaatgtgactgaatggaagagtgcattggctagattgagaga 33389563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 31245604 - 31245829
Alignment:
Q  1 ttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagagagaatcccatggcagaaattatggatgtactacggc 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| || || | | |||| |||||||||||||| ||      
T  31245604 ttgggctcatttttgtatggccgagatgtctctgaatggagaagtgcattggcaaggttaagagaaaacccaaggacagatattatggatgtacttcgaa 31245703  T
Q  101 ttagttatgatggactaaaggatatagaaaaggagatttttctggatattgcttgtttctttgatgnnnnnnnnnnnncatacgtgaagaaagttttaga 200  Q
    |||||| |||||||||| |||||| ||||||||| || ||| | |||||||||||||||||| ||             |||||||||| |||||||||||    
T  31245704 ttagttttgatggactagaggatacagaaaaggatatatttttagatattgcttgtttcttttataaaaaatcggagacatacgtgaataaagttttaga 31245803  T
Q  201 ttttcgtggatttcatcccgaaattg 226  Q
    |||||||||||||||||| |||||||    
T  31245804 ttttcgtggatttcatcctgaaattg 31245829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 31019349 - 31019291
Alignment:
Q  1 ttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagatt 59  Q
    |||||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||    
T  31019349 ttgggctcatttttgtttggtcgagatatctccgaatggagaagtgcattggctagatt 31019291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 31029230 - 31029166
Alignment:
Q  1 ttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagaga 65  Q
    |||||||||||||||| |||||||||| |||||||||||||||||  |||||| ||||| |||||    
T  31029230 ttgggctcatttttgtttggtcgagatatctctgaatggagaagtaaattggctagattgagaga 31029166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 31527958 - 31527888
Alignment:
Q  1 ttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagagagaatcc 71  Q
    |||||||||||||||| |||||||||| | | ||||||||||||||||||| | ||||| ||||| |||||    
T  31527958 ttgggctcatttttgtttggtcgagatatttatgaatggagaagtgcattgactagattgagagacaatcc 31527888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 31033565 - 31033496
Alignment:
Q  1 ttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagagagaatcc 71  Q
    ||||||||||||| || ||||||| || |||||||||||| |||||||||||| ||||| ||||| |||||    
T  31033565 ttgggctcatttt-gtgtggtcgaaatatctctgaatggacaagtgcattggctagattgagagaaaatcc 31033496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 31477496 - 31477548
Alignment:
Q  1 ttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggc 53  Q
    ||||| |||||||||| |||||| ||| | |||||||||||||||||||||||    
T  31477496 ttgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggc 31477548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 31158798 - 31158740
Alignment:
Q  1 ttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagatt 59  Q
    ||||| |||||||||| |||||||||  ||| |||||||| |||||||||||| |||||    
T  31158798 ttgggatcatttttgtttggtcgagacatctatgaatggaaaagtgcattggctagatt 31158740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 161
Target Start/End: Original strand, 14724899 - 14725022
Alignment:
Q  38 ggagaagtgcattggccagattaagagagaatcccatggcagaaattatggatgtactacggcttagttatgatggactaaaggatatagaaaaggagat 137  Q
    ||||||||| |||||| ||||||||||||||||| | |||||| |||||||||||||| ||  |||||| ||| ||||||||||||| ||||||||| ||    
T  14724899 ggagaagtgtattggcaagattaagagagaatccaagggcagatattatggatgtacttcgaattagttttgaaggactaaaggatacagaaaaggatat 14724998  T
Q  138 ttttctggatattgcttgtttctt 161  Q
     ||||| |||||||||||||||||    
T  14724999 atttctagatattgcttgtttctt 14725022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 17598863 - 17598740
Alignment:
Q  38 ggagaagtgcattggccagattaagagagaatcccatggcagaaattatggatgtactacggcttagttatgatggactaaaggatatagaaaaggagat 137  Q
    ||||||||| |||||| ||||||||||||||||| | |||||| ||||||||||||||     |||||| ||| ||||||||||||| ||||||||| ||    
T  17598863 ggagaagtgtattggcaagattaagagagaatccaagggcagatattatggatgtacttttaattagttttgaaggactaaaggatacagaaaaggatat 17598764  T
Q  138 ttttctggatattgcttgtttctt 161  Q
     ||||| |||||||||||||||||    
T  17598763 atttctagatattgcttgtttctt 17598740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University