View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2872_low_15 (Length: 241)
Name: NF2872_low_15
Description: NF2872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2872_low_15 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 47191938 - 47192168
Alignment:
| Q |
11 |
cagagaccaacctgttaacggcaaacactcaaaactctcacttttcaaaaacggtaatctcattttaaccgatgcagacagaaaaagaacaccaatttgg |
110 |
Q |
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| T |
47191938 |
cagagaccaacctgttaacggcaaacactcaaaactctcacttttcaaaaacggtaatctcattttaaccgatgcagacagaaaaagaacaccaatttgg |
47192037 |
T |
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| Q |
111 |
tccacttcatccttttctccttttccattacagctcaagcttcaaaacaatggcaacctcgttctcgccacgaccaacggtaacattagtatcctttggc |
210 |
Q |
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| T |
47192038 |
tccacttcatccttttctccttttccattacagctcaagcttcaaaacaatggcaacctcgttctctccacgaccaacggtaacattagtatcctttggc |
47192137 |
T |
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| Q |
211 |
aaagctttgattttccaacagatactcttct |
241 |
Q |
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| T |
47192138 |
aaagctttgattttccaacagatactcttct |
47192168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 26693264 - 26693292
Alignment:
| Q |
207 |
tggcaaagctttgattttccaacagatac |
235 |
Q |
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| T |
26693264 |
tggcaaagctttgattttccaacagatac |
26693292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 26745784 - 26745712
Alignment:
| Q |
15 |
gaccaacctgttaacggcaaacactcaaaactctcacttttcaaaaacggtaatctcattttaaccgatgcag |
87 |
Q |
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| T |
26745784 |
gaccaacctgttaacggaaaacgctcaacactttcccttctcaaaactggcaacctcattttaaccgacgcag |
26745712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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