View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2872_low_2 (Length: 544)

Name: NF2872_low_2
Description: NF2872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2872_low_2
NF2872_low_2
[»] chr6 (4 HSPs)
chr6 (20-491)||(684046-684519)
chr6 (34-91)||(32509060-32509117)
chr6 (46-87)||(30747705-30747746)
chr6 (47-83)||(6734227-6734263)
[»] chr4 (3 HSPs)
chr4 (34-118)||(8525639-8525723)
chr4 (40-89)||(43115177-43115226)
chr4 (46-91)||(31893447-31893492)
[»] chr2 (2 HSPs)
chr2 (46-111)||(6074277-6074342)
chr2 (46-83)||(17149725-17149762)
[»] scaffold0063 (1 HSPs)
scaffold0063 (58-105)||(54780-54827)
[»] chr8 (2 HSPs)
chr8 (51-118)||(45218443-45218510)
chr8 (34-91)||(17852328-17852385)
[»] scaffold0039 (1 HSPs)
scaffold0039 (34-104)||(93426-93496)
[»] chr7 (5 HSPs)
chr7 (56-118)||(8838419-8838481)
chr7 (34-118)||(29892842-29892927)
chr7 (47-87)||(39725109-39725149)
chr7 (47-87)||(39726822-39726862)
chr7 (47-87)||(39723245-39723285)
[»] chr5 (2 HSPs)
chr5 (47-115)||(18615734-18615802)
chr5 (46-110)||(11891891-11891955)
[»] chr1 (3 HSPs)
chr1 (34-88)||(35377480-35377534)
chr1 (39-89)||(49877930-49877980)
chr1 (47-115)||(15100659-15100727)
[»] chr3 (1 HSPs)
chr3 (69-109)||(28770169-28770209)


Alignment Details
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 20 - 491
Target Start/End: Original strand, 684046 - 684519
Alignment:
Q  20 tatgtgtgtaactatactcgattactcttaattaaatttatattt--attgttaacttttcatataccaagacatattaatagtattaataaaaggtata 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||  |||||| ||||||||||||||||| |||||||    
T  684046 tatgtgtgtaactatactcgattactcttaattaaatttatatttttattgttaatttttcatatattaagacaaattaatagtattaataagaggtata 684145  T
Q  118 tatatgagttagaaatgttcatgattggtgatggtgatgcagatagatcgggttgagtaagattttatttaaacattaatgttatattcaacgaaataaa 217  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||    
T  684146 tatatgagttagaaatgttcatgattggggatggtgatgcagatagatcgggtctagtaagattttatttaaacattaatgttgtattcaacgaaataaa 684245  T
Q  218 attccacgaacacatcgtgaaaatgttttcaaccaatgagacagcgtgccttaaaggaattcaagggcacttatagacacatggtagtcaacaaaaaatg 317  Q
    || ||| |||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||| |||||||||||||||||| |||    
T  684246 atcccatgaacacatggtgaaaatgttttcaaccaatgagagagcgtgccttaacggaattcaagggcacttaaagaaacatggtagtcaacaaaacatg 684345  T
Q  318 actttgtggaatacacatgctctatggtccgcgaaatcataattcattataattagcattattgttatttgtttgtgtaaactttgtcttttaagaaaaa 417  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| ||||    
T  684346 actttgtggaatacacatgcgctatggtccgtgaaatcataattcattataattagcattattgttatttatttgtgttaactctgtcttttaaggaaaa 684445  T
Q  418 cagattttgataatccgaagttcgattcactcaaattattgttcataactagacaacagtttggcatcaaattt 491  Q
    |||| ||||||||| ||||||||| |||||||||||||||||| | |||||||||||||||||| |||||||||    
T  684446 cagactttgataattcgaagttcgtttcactcaaattattgtttagaactagacaacagtttggtatcaaattt 684519  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 32509060 - 32509117
Alignment:
Q  34 tactcgattactcttaattaaatttatatttattgttaacttttcatataccaagaca 91  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  32509060 tactagattactcttaattaaatatatatttaatgttaacttttcatataccaagaca 32509117  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 30747705 - 30747746
Alignment:
Q  46 cttaattaaatttatatttattgttaacttttcatataccaa 87  Q
    ||||||||||| |||||||| |||||||||||||||||||||    
T  30747705 cttaattaaatatatatttaatgttaacttttcatataccaa 30747746  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 6734227 - 6734263
Alignment:
Q  47 ttaattaaatttatatttattgttaacttttcatata 83  Q
    |||||||||| |||||||| |||||||||||||||||    
T  6734227 ttaattaaatatatatttaatgttaacttttcatata 6734263  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 118
Target Start/End: Complemental strand, 8525723 - 8525639
Alignment:
Q  34 tactcgattactcttaattaaatttatatttattgttaacttttcatataccaagacatattaatagtattaataaaaggtatat 118  Q
    |||| |||||||||||||||| | |||||||| |  |||||||||||||||||||||| ||| |||||||||||||  |||||||    
T  8525723 tactagattactcttaattaagtatatatttaattctaacttttcatataccaagacaaattgatagtattaataaggggtatat 8525639  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 43115177 - 43115226
Alignment:
Q  40 attactcttaattaaatttatatttattgttaacttttcatataccaaga 89  Q
    ||||| |||||||||| ||| ||||| |||||||||||||||||||||||    
T  43115177 attacccttaattaaaattacatttaatgttaacttttcatataccaaga 43115226  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 31893447 - 31893492
Alignment:
Q  46 cttaattaaatttatatttattgttaacttttcatataccaagaca 91  Q
    |||||| |||| |||||||| ||||||||||||||| |||||||||    
T  31893447 cttaatcaaatatatatttaatgttaacttttcataaaccaagaca 31893492  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 6074342 - 6074277
Alignment:
Q  46 cttaattaaatttatatttattgttaacttttcatataccaagacatattaatagtattaataaaa 111  Q
    ||||||| ||| |||||||| | ||||||||||||||||||||||| |||  ||||||||||||||    
T  6074342 cttaatttaatatatatttaattttaacttttcatataccaagacaaatttgtagtattaataaaa 6074277  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 17149725 - 17149762
Alignment:
Q  46 cttaattaaatttatatttattgttaacttttcatata 83  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  17149725 cttaattaaatatatatttaatgttaacttttcatata 17149762  T

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Target: scaffold0063 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 54780 - 54827
Alignment:
Q  58 tatatttattgttaacttttcatataccaagacatattaatagtatta 105  Q
    |||||||||||||||||||||||||||||| ||| ||||| |||||||    
T  54780 tatatttattgttaacttttcatataccaaaacaaattaacagtatta 54827  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 45218510 - 45218443
Alignment:
Q  51 ttaaatttatatttattgttaacttttcatataccaagacatattaatagtattaataaaaggtatat 118  Q
    |||||| |||||||| ||||||||||||||||||||||||| |||  || |||||||||  |||||||    
T  45218510 ttaaatatatatttaatgttaacttttcatataccaagacaaattggtaatattaataaggggtatat 45218443  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 17852328 - 17852385
Alignment:
Q  34 tactcgattactcttaattaaatttatatttattgttaacttttcatataccaagaca 91  Q
    |||||| |||| ||||||||||| |||||||| ||||||||||||||| | |||||||    
T  17852328 tactcggttacacttaattaaatatatatttaatgttaacttttcataaagcaagaca 17852385  T

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Target: scaffold0039 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 93496 - 93426
Alignment:
Q  34 tactcgattactcttaattaaatttatatttattgttaacttttcatataccaagacatattaatagtatt 104  Q
    |||| ||||||||||| |||| | |||||||| | ||||||||||||||||||||||| |||  |||||||    
T  93496 tactagattactcttagttaactatatatttaatattaacttttcatataccaagacaaattggtagtatt 93426  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 8838481 - 8838419
Alignment:
Q  56 tttatatttattgttaacttttcatataccaagacatattaatagtattaataaaaggtatat 118  Q
    |||||||||  ||||||||||||||||| ||||||| |||  |||||||||||| ||||||||    
T  8838481 tttatatttcatgttaacttttcatatatcaagacaaattggtagtattaataagaggtatat 8838419  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 29892842 - 29892927
Alignment:
Q  34 tactcgattactcttaattaa-atttatatttattgttaacttttcatataccaagacatattaatagtattaataaaaggtatat 118  Q
    |||| |||||| |||||| || || |||||||| ||||||||||||||||||||| ||| |||  ||||||||||||  |||||||    
T  29892842 tactagattacccttaataaatatatatatttaatgttaacttttcatataccaaaacaaattggtagtattaataaggggtatat 29892927  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 39725109 - 39725149
Alignment:
Q  47 ttaattaaatttatatttattgttaacttttcatataccaa 87  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  39725109 ttaattaaatatatatttagtgttaacttttcatataccaa 39725149  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 39726822 - 39726862
Alignment:
Q  47 ttaattaaatttatatttattgttaacttttcatataccaa 87  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  39726822 ttaattaaatatatatttagtgttaacttttcatataccaa 39726862  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 39723245 - 39723285
Alignment:
Q  47 ttaattaaatttatatttattgttaacttttcatataccaa 87  Q
    |||||| ||| |||||||| |||||||||||||||||||||    
T  39723245 ttaatttaatatatatttagtgttaacttttcatataccaa 39723285  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 18615734 - 18615802
Alignment:
Q  47 ttaattaaatttatatttattgttaacttttcatataccaagacatattaatagtattaataaaaggta 115  Q
    |||||| ||| |||||||| ||||||||||||||||  | ||||| ||| ||||||||||||| |||||    
T  18615734 ttaattcaatatatatttaatgttaacttttcatatctcgagacaaattgatagtattaataagaggta 18615802  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 11891955 - 11891891
Alignment:
Q  46 cttaattaaatttatatttattgttaacttttcatataccaagacatattaatagtattaataaa 110  Q
    ||||||||||| ||||||||  || |||||||||||| |||| ||| |||| || ||||||||||    
T  11891955 cttaattaaatatatatttaacgtgaacttttcatatgccaaaacaaattagtaatattaataaa 11891891  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 35377480 - 35377534
Alignment:
Q  34 tactcgattactcttaattaaatttatatttattgttaacttttcatataccaag 88  Q
    |||| |||||| ||||||||||| || ||||| |||||||||||||| |||||||    
T  35377480 tactagattacccttaattaaatatagatttaatgttaacttttcatgtaccaag 35377534  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 49877980 - 49877930
Alignment:
Q  39 gattactcttaattaaatttatatttattgttaacttttcatataccaaga 89  Q
    |||||| | ||||||||| |||||||| |||||||||||||||| ||||||    
T  49877980 gattacccctaattaaatatatatttaatgttaacttttcatatgccaaga 49877930  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 15100727 - 15100659
Alignment:
Q  47 ttaattaaatttatatttattgttaacttttcatataccaagacatattaatagtattaataaaaggta 115  Q
    |||||| ||| |||||||| ||||||||||||||||  | ||||| ||| ||||| ||||||| |||||    
T  15100727 ttaattcaatatatatttaatgttaacttttcatatctcgagacaaattgatagtgttaataagaggta 15100659  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 28770209 - 28770169
Alignment:
Q  69 ttaacttttcatataccaagacatattaatagtattaataa 109  Q
    ||||||||||||||||||| ||| ||| |||||||||||||    
T  28770209 ttaacttttcatataccaaaacaaattgatagtattaataa 28770169  T

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