View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2872_low_3 (Length: 482)
Name: NF2872_low_3
Description: NF2872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2872_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 450
Target Start/End: Original strand, 13656917 - 13657351
Alignment:
| Q |
19 |
attttacaatgcatgagattggtcatccaaaataagatgatagtgttcaagcatgcatggttttgcagcaatggtacacgacacaaagtggtggacatgt |
118 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13656917 |
attttacaatgcatgagattggtaatccaaaataagatgatagtgttcaagcatgcatggtattgcagcaatggtacacgacacaaagtggtggacatgt |
13657016 |
T |
|
| Q |
119 |
tgaccatggcagtagtaatcagtcatttgtgtatcaatacacaaaatttaagttgtgcccccacacgagggtcggcctaagagtaaggttaccaaagcct |
218 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
13657017 |
tgaccatggcagtagtaatcactcatttgtgtatcaatacacaaaatttaagttgtgcccccacacgagggtcggcctaagagtaaggtcaccaaagtct |
13657116 |
T |
|
| Q |
219 |
ctgatttagatctaccaacaaaaattatttttcattaaattttacaaacaataattctaac---nnnnnnnggctaatgtattgaatcttactttaggca |
315 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| || |||||||| |||||||| ||| |
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| T |
13657117 |
ctgatttagatctaccaacagaaattatttttcattagattttacaaacaataattctaacaaaaaaaaaaggctcatatattgaattttactttaagca |
13657216 |
T |
|
| Q |
316 |
tcacttacttttaataaaatttgggttggctctgccccatactcagatgatatttatgacttcaaaataaaaagacggacgagccaaacttaaaattgta |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
13657217 |
tcacttacttttaataaaatttgggttggctctgccccatacacagatgatatttatgactttaaaataaaaagacggacgagccaaacataaaattgta |
13657316 |
T |
|
| Q |
416 |
tttttagatgtcttctttcttctaagttcatgttc |
450 |
Q |
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| | | || ||||||||||||||| ||||||||| |
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| T |
13657317 |
tatctggacatcttctttcttctaacttcatgttc |
13657351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 450
Target Start/End: Original strand, 13715559 - 13715993
Alignment:
| Q |
19 |
attttacaatgcatgagattggtcatccaaaataagatgatagtgttcaagcatgcatggttttgcagcaatggtacacgacacaaagtggtggacatgt |
118 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13715559 |
attttacaatgcatgagattggtaatccaaaataagatgatagtgttcaagcatgcatggtattgcagcaatggtacacgacacaaagtggtggacatgt |
13715658 |
T |
|
| Q |
119 |
tgaccatggcagtagtaatcagtcatttgtgtatcaatacacaaaatttaagttgtgcccccacacgagggtcggcctaagagtaaggttaccaaagcct |
218 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
13715659 |
tgaccatggcagtagtaatcactcatttgtgtatcaatacacaaaatttaagttgtgcccccacacgagggtcggcctaagagtaaggtcaccaaagtct |
13715758 |
T |
|
| Q |
219 |
ctgatttagatctaccaacaaaaattatttttcattaaattttacaaacaataattctaac---nnnnnnnggctaatgtattgaatcttactttaggca |
315 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| || |||||||| |||||||| ||| |
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| T |
13715759 |
ctgatttagatctaccaacagaaattatttttcattagattttacaaacaataattctaacaaaaaaaaaaggctcatatattgaattttactttaagca |
13715858 |
T |
|
| Q |
316 |
tcacttacttttaataaaatttgggttggctctgccccatactcagatgatatttatgacttcaaaataaaaagacggacgagccaaacttaaaattgta |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
13715859 |
tcacttacttttaataaaatttgggttggctctgccccatacacagatgatatttatgactttaaaataaaaagacggacgagccaaacataaaattgta |
13715958 |
T |
|
| Q |
416 |
tttttagatgtcttctttcttctaagttcatgttc |
450 |
Q |
| |
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| | | || ||||||||||||||| ||||||||| |
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| T |
13715959 |
tatctggacatcttctttcttctaacttcatgttc |
13715993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 262
Target Start/End: Complemental strand, 26765191 - 26765152
Alignment:
| Q |
223 |
tttagatctaccaacaaaaattatttttcattaaatttta |
262 |
Q |
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|||||| | ||||||||||||||||||||||||||||||| |
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| T |
26765191 |
tttagacccaccaacaaaaattatttttcattaaatttta |
26765152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 18732314 - 18732352
Alignment:
| Q |
232 |
accaacaaaa-attatttttcattaaattttacaaacaa |
269 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |
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| T |
18732314 |
accaacaaaacattatttttcattaaattttacaaacaa |
18732352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 269
Target Start/End: Complemental strand, 41872461 - 41872428
Alignment:
| Q |
236 |
acaaaaattatttttcattaaattttacaaacaa |
269 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
41872461 |
acaaaaattatttttcattaaattttataaacaa |
41872428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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