View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2872_low_4 (Length: 462)
Name: NF2872_low_4
Description: NF2872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2872_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 3 - 446
Target Start/End: Original strand, 4020069 - 4020512
Alignment:
| Q |
3 |
cacagaaccatgcatcatactttatttgaggaatattaacggatattgactttttccactatggcctgcgattttagaaataaccaatttgatctgatat |
102 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4020069 |
cacaaaaccatgcatcatactttatttgaggaatattaacggatattgactttttccactatggcctgcgattttagaaatagccaatttgatctgatat |
4020168 |
T |
|
| Q |
103 |
ggaagaagcaaggtcattgaccttacagtttacagttcagacatacacattcacactcccacagagcattggatttgttaaaaaccattatttaaataca |
202 |
Q |
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| T |
4020169 |
ggaagaagcaaggtcattgaccttacagtttacagttcagacatacacattcacactcccacagagcattggatttgttaaaaaccattatttaaataca |
4020268 |
T |
|
| Q |
203 |
aaaatataaaatagttaaaccattgcatggcaggggaaacgttgactttccaaacagtttacatgctgaaaatatctgtatgaaccatgttacatgcact |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4020269 |
aaaatataaaatagttaaaccattgcatggcaggggaaactttgactttccaaacagtttacatgctgaaaatatctgtatgaaccatgttgcatgcact |
4020368 |
T |
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| Q |
303 |
ttcctttaaatttaaatatattaaaatattaataacttcnnnnnnnaataatggtgggtggatgagtttgattcctctctttaaattctccctcagtttc |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
4020369 |
ttcctttaaatttaaatatattaaaatattaataacttctttttttaataatggtgggtgaataagtttgattcctctctttaaattctccctcagtttc |
4020468 |
T |
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| Q |
403 |
tctcaatcttttctatctctttcttgactaaaaaatgttataat |
446 |
Q |
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| T |
4020469 |
tctcaatcttttctatctctttcttgactaaaaaatgttataat |
4020512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 204 - 437
Target Start/End: Complemental strand, 3961045 - 3960810
Alignment:
| Q |
204 |
aaatataaaatagttaaaccattgcatggc-aggggaaacgttgactttccaaacagtttacatgctgaaaatatctgtatgaaccatgttacatgcact |
302 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||| |||| |||| |||||||||| || || |||||| |
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| T |
3961045 |
aaatataaaatagttaaaccattgcatggctaggggaaacgttgacttgccaaacagtatacatgttgaagttatccgtatgaaccaagtgacttgcact |
3960946 |
T |
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| Q |
303 |
ttcctttaaatttaaatatattaaaatattaataactt--cnnnnnnnaataatggtgggtggatgagtttgattcctctc-tttaaattctccctcagt |
399 |
Q |
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| T |
3960945 |
ttcctttaaatttaaatatattaaaatatttgtaactttcctttctttaataatggtgattgaatgagtttgattcctctcttttaaattctccctca-- |
3960848 |
T |
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| Q |
400 |
ttctctcaatcttttctatctctttcttgactaaaaaa |
437 |
Q |
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| T |
3960847 |
ttttctcaatcttttctatctcactcttgactgaaaaa |
3960810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 3806351 - 3806431
Alignment:
| Q |
8 |
aaccatgcatcatactttatttgaggaatattaacggatattgactttttccactatggcctgcgattttagaaataaccaa |
89 |
Q |
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| T |
3806351 |
aaccatgcatcatactttattcgaggaatattaactgatattgaccttttccactatgg-ctgcaatgttagaaataaccaa |
3806431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 3812994 - 3813074
Alignment:
| Q |
8 |
aaccatgcatcatactttatttgaggaatattaacggatattgactttttccactatggcctgcgattttagaaataaccaa |
89 |
Q |
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| T |
3812994 |
aaccatgcatcatactttattcgaggaatattaactgatattgaccttttccactatgg-ctgcaatgttagaaataaccaa |
3813074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 204 - 340
Target Start/End: Original strand, 4005668 - 4005811
Alignment:
| Q |
204 |
aaatataaaatagttaaaccattgcatggcaggggaaacgttgactttccaaacagtttac-------atgctgaaaatatctgtatgaaccatgttaca |
296 |
Q |
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||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||| ||| ||| | | |||||||||||| | || ||| |
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| T |
4005668 |
aaatataaaatagttaaacaattgcaaggcagggggaacgttgacttgtcaaacagtatactgtatacatgtttggattatctgtatgaatgacgtgaca |
4005767 |
T |
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| Q |
297 |
tgcactttcctttaaatttaaatatattaaaatattaataactt |
340 |
Q |
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| T |
4005768 |
tgcactttcctttaaatttaaatatgttaaaatattaataactt |
4005811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 4221379 - 4221423
Alignment:
| Q |
297 |
tgcactttcctttaaatttaaatatattaaaatattaataacttc |
341 |
Q |
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| T |
4221379 |
tgcactttcctttaaatttaaatatattaaaatattaataacttc |
4221423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 332
Target Start/End: Original strand, 3822909 - 3822944
Alignment:
| Q |
297 |
tgcactttcctttaaatttaaatatattaaaatatt |
332 |
Q |
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||||||||||| |||||||||||||||||||||||| |
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| T |
3822909 |
tgcactttcctctaaatttaaatatattaaaatatt |
3822944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 3793230 - 3793286
Alignment:
| Q |
31 |
aggaatattaacggatattgactttttccactatggcctgcgattttagaaataacca |
88 |
Q |
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|||||||||||| ||||||||| ||||||| ||||| |||| || ||||||||||||| |
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| T |
3793230 |
aggaatattaactgatattgacgttttccattatgg-ctgcaatgttagaaataacca |
3793286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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