View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2872_low_5 (Length: 457)
Name: NF2872_low_5
Description: NF2872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2872_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 147 - 441
Target Start/End: Complemental strand, 7089339 - 7089045
Alignment:
| Q |
147 |
ttgtgttattgtatttgcagctctttctggtgatatgagcaaacttctcttggcagcaaagaagattagaagagcaacatgcacagaatttttaatatca |
246 |
Q |
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| T |
7089339 |
ttgtgttattgtatttgcagctctttctggtgatatgagcaaacttctcttggcagcaaagaagattagaagagcaacatgcacagaatttttaatatca |
7089240 |
T |
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| Q |
247 |
ttggttactgatgatttctctagagctaacaatacttacattggaaagttaaggttagtgtcctcaatcaatccacattttttcatggttaatgcattat |
346 |
Q |
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| T |
7089239 |
ttggtttctgatgatttctctagagctaacaatacttacattggaaagttaaggttagtctcctcaatcaatccacattttttcatggttaatgcattat |
7089140 |
T |
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| Q |
347 |
tattctactgtttacttgatcattaagcaatgaacaggtctaattttctcggcaccaagttcacaatcttagatggtcatcctccacatgtgtct |
441 |
Q |
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| T |
7089139 |
tattctactgtttacttgatcattaagcaatgaacaggtctaattttctcggcaccaagttcacaatcttagatggtcatcctccacatgtgtct |
7089045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 71 - 437
Target Start/End: Complemental strand, 7668751 - 7668391
Alignment:
| Q |
71 |
ggaaatgtaacaaatagtctcttaactattctcaatctatgaagttagtagctaaattatctcttaacttagtgaattgtgttattgtatttgcagctct |
170 |
Q |
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| T |
7668751 |
ggaaatgtaataaatagtctataaactattctcgatctatgaagttagtctctaaactacc----atctttgtgaattgtgttattgtatttgcagctct |
7668656 |
T |
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| Q |
171 |
ttctggtgatatgagcaaacttctcttggcagcaaagaagattagaagagcaacatgcacagaatttttaatatcattggttactgatgatttctctaga |
270 |
Q |
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| T |
7668655 |
ttctggtgat--gagcaaacttctcttggctgcaaagaagattagaagagcaacatgcacaaattttttaatatcattggtttctgatgatttctctaga |
7668558 |
T |
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| Q |
271 |
gctaacaatacttacattggaaagttaaggttagtgtcctcaatcaatccacattttttcatggttaatgcattattattctactgtttacttgatcatt |
370 |
Q |
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| T |
7668557 |
gctaacaatacttacattggaaagttaaggttagtgtcccatatcaattcacatctttt-aaggctaatgcattattattctagtgcttagttgatcatt |
7668459 |
T |
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| Q |
371 |
aagc-aatgaacaggtctaattttctcggcaccaagttcacaatcttagatggtcatcctccacatgt |
437 |
Q |
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| T |
7668458 |
aagcaaaataacaggtctaattttctcggcaccaagttcacgatcttggatggtcatcctccacatgt |
7668391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 7089431 - 7089340
Alignment:
| Q |
19 |
acaattcaatcattaaactgttaccttatctcttattcagtccctaaagtatggaaatgtaacaaatagtctcttaactattctcaatctat |
110 |
Q |
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| T |
7089431 |
acaattcaatcattaaactgttaccttatctcttattcagtccctaaagtatggaaatgtaacaaatagtctcttaactattctcaatctat |
7089340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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