View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2872_low_6 (Length: 394)

Name: NF2872_low_6
Description: NF2872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2872_low_6
NF2872_low_6
[»] chr7 (12 HSPs)
chr7 (10-378)||(22333797-22334160)
chr7 (96-151)||(33072104-33072159)
chr7 (86-152)||(26300684-26300750)
chr7 (86-151)||(9332074-9332139)
chr7 (96-151)||(33343111-33343166)
chr7 (96-151)||(34270384-34270439)
chr7 (88-151)||(39757110-39757173)
chr7 (96-151)||(46290133-46290188)
chr7 (96-153)||(25709397-25709454)
chr7 (101-153)||(2341877-2341929)
chr7 (86-150)||(26050462-26050526)
chr7 (86-150)||(26059821-26059885)
[»] chr8 (11 HSPs)
chr8 (86-151)||(9801781-9801846)
chr8 (86-151)||(3306055-3306120)
chr8 (86-151)||(26682181-26682246)
chr8 (86-151)||(26834674-26834739)
chr8 (86-150)||(4080395-4080459)
chr8 (86-150)||(4084544-4084608)
chr8 (86-150)||(4102851-4102915)
chr8 (86-150)||(13327942-13328006)
chr8 (96-151)||(2161510-2161565)
chr8 (101-151)||(6818145-6818195)
chr8 (86-151)||(31812226-31812291)
[»] chr4 (7 HSPs)
chr4 (96-151)||(9759142-9759197)
chr4 (86-151)||(23051382-23051447)
chr4 (88-152)||(53961437-53961501)
chr4 (96-151)||(40049681-40049736)
chr4 (96-151)||(50352425-50352480)
chr4 (86-143)||(27756674-27756731)
chr4 (91-151)||(27362509-27362569)
[»] chr3 (5 HSPs)
chr3 (97-151)||(40330295-40330349)
chr3 (96-151)||(2571391-2571446)
chr3 (96-151)||(10307889-10307944)
chr3 (86-151)||(23523059-23523124)
chr3 (86-151)||(38389560-38389625)
[»] chr2 (7 HSPs)
chr2 (97-151)||(38248420-38248474)
chr2 (88-143)||(8770894-8770949)
chr2 (86-149)||(14377537-14377600)
chr2 (96-151)||(24729577-24729632)
chr2 (86-151)||(4576326-4576391)
chr2 (86-151)||(9747430-9747495)
chr2 (97-150)||(34213950-34214003)
[»] chr5 (9 HSPs)
chr5 (86-143)||(15190986-15191043)
chr5 (96-151)||(30839904-30839959)
chr5 (86-149)||(30893742-30893805)
chr5 (96-151)||(36597702-36597757)
chr5 (97-151)||(23995416-23995470)
chr5 (86-152)||(32019983-32020049)
chr5 (86-151)||(11636844-11636909)
chr5 (86-143)||(41350315-41350372)
chr5 (96-148)||(40513074-40513126)
[»] chr1 (4 HSPs)
chr1 (86-151)||(23576414-23576479)
chr1 (96-151)||(1502720-1502775)
chr1 (86-151)||(30362995-30363060)
chr1 (96-152)||(1366170-1366226)
[»] chr6 (5 HSPs)
chr6 (91-151)||(3853061-3853121)
chr6 (99-151)||(17552587-17552639)
chr6 (96-151)||(14228126-14228181)
chr6 (96-151)||(28943769-28943824)
chr6 (86-151)||(27819627-27819692)
[»] scaffold0229 (1 HSPs)
scaffold0229 (96-152)||(24526-24582)


Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 378
Target Start/End: Complemental strand, 22334160 - 22333797
Alignment:
Q  10 attatactattagcaaactggctgaaacaggtgtcagatatatcatatttgagctacttgttatnnnnnnnntacgagtttcaagtcaaaattactattt 109  Q
    ||||||| |||||||||||| |||||||| ||||||||||||||| |||||||| |||||||||         ||| ||||||||||||| |||||| ||    
T  22334160 attataccattagcaaactgactgaaacatgtgtcagatatatcacatttgagccacttgttataaaaaac--acgtgtttcaagtcaaagttactactt 22334063  T
Q  110 tatatttcttaacatttacaaatttgtacatgattgaaaaacttcatataaattatagagtcaaatacattttaatgataggatcgtcaacataactttc 209  Q
    || | |||||||||| |||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  22334062 taaacttcttaacatgtacaaatttgcacatgattgaaaaactttttataaattatagagtcaaatacattttaatgataggatc---aacataactttc 22333966  T
Q  210 tcatggttttttacacactagaggatccaaatcctcatttgtactctcatcaataatgtttgctcataaaagaaaaacatataaaattatgtgtgaaaac 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22333965 tcatggttttttacacactagaggatccaaatcctcatttgtactctcatcaataatgtttgctcataaaagaaaaacatataaaattatgtgtgaaaac 22333866  T
Q  310 aacaaggtacaaacattatcttaaaccaaaagtaaaacctgttctagtctaattatgtaattaaattag 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22333865 aacaaggtacaaacattatcttaaaccaaaagtaaaacctgttctagtctaattatgtaattaaattag 22333797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 33072104 - 33072159
Alignment:
Q  96 caaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||| ||||||||||| |||||||||||| |||||||||| ||||||| |||||||    
T  33072104 caaagttactattttaaatttcttaacatgtacaaatttgcacatgatagaaaaac 33072159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 26300684 - 26300750
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaact 152  Q
    |||||||| ||||| ||||||||||| | || ||||||| | |||||||||||||||| ||||||||    
T  26300684 agtttcaattcaaagttactattttaaactttttaacatgtgcaaatttgtacatgatggaaaaact 26300750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 9332074 - 9332139
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||||||||||||| |||||| |||| | |||||||||| | |||||||| ||||||| |||||||    
T  9332074 agtttcaagtcaaagttactaatttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 9332139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 33343111 - 33343166
Alignment:
Q  96 caaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||| ||||||||||| |||||||||||| | |||||||| ||||||| |||||||    
T  33343111 caaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 33343166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 34270384 - 34270439
Alignment:
Q  96 caaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||| ||||||||||| |||||||||||| | |||||||| ||||||| |||||||    
T  34270384 caaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 34270439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 151
Target Start/End: Complemental strand, 39757173 - 39757110
Alignment:
Q  88 tttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||||||| ||| ||||||||||| | |||||||||| | |||||||| ||||||| |||||||    
T  39757173 tttcaagttaaagttactattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 39757110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 46290133 - 46290188
Alignment:
Q  96 caaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||| ||||||||||| |||||||||||| | |||||||| ||||||| |||||||    
T  46290133 caaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 46290188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 25709454 - 25709397
Alignment:
Q  96 caaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaactt 153  Q
    |||| ||||||||||| | |||||||||| | |||||||| ||||||| |||||||||    
T  25709454 caaagttactattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaactt 25709397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 2341877 - 2341929
Alignment:
Q  101 ttactattttatatttcttaacatttacaaatttgtacatgattgaaaaactt 153  Q
    ||||||||||| |||| ||||||| | ||||||| |||||||| |||||||||    
T  2341877 ttactattttaaattttttaacatgtgcaaatttatacatgatagaaaaactt 2341929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 26050526 - 26050462
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaa 150  Q
    |||| |||| |||| |||| |||||| |||||||||||| | |||||||| ||||||| ||||||    
T  26050526 agttacaagacaaatttaccattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaa 26050462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 26059885 - 26059821
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaa 150  Q
    |||| |||| |||| |||| |||||| |||||||||||| | |||||||| ||||||| ||||||    
T  26059885 agttacaagacaaatttaccattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaa 26059821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 9801781 - 9801846
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||||||||||||| |||||| |||| | |||||||||| | |||||||| |||||||||||||||    
T  9801781 agtttcaagtcaaagttactactttaaacttcttaacatgtgcaaatttgcacatgattgaaaaac 9801846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 3306120 - 3306055
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    ||||||||  |||| ||||||||||| |||||||||||| | |||||||| ||||||| |||||||    
T  3306120 agtttcaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 3306055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 26682181 - 26682246
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||| ||||||||| |||||| |||| |||||||||||| | |||||||| ||||||| |||||||    
T  26682181 agttccaagtcaaagttactactttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 26682246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 26834674 - 26834739
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||| |||||||||||||| |||||| ||||||||| || | |||||||| ||||||| |||||||    
T  26834674 agttccaagtcaaaattaccattttaaatttcttaatatatgcaaatttgcacatgatagaaaaac 26834739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 4080459 - 4080395
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaa 150  Q
    |||||||||||||| |||||| |||| |||||||| ||| | |||||||| ||||||| ||||||    
T  4080459 agtttcaagtcaaagttactactttaaatttcttatcatgtgcaaatttgcacatgatagaaaaa 4080395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 4084608 - 4084544
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaa 150  Q
    |||||||||||||| |||||| |||| |||||||| ||| | |||||||| ||||||| ||||||    
T  4084608 agtttcaagtcaaagttactactttaaatttcttatcatgtgcaaatttgcacatgatagaaaaa 4084544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 4102915 - 4102851
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaa 150  Q
    |||||||||||||| |||||| |||| |||||||| ||| | |||||||| ||||||| ||||||    
T  4102915 agtttcaagtcaaagttactactttaaatttcttatcatgtgcaaatttgcacatgatagaaaaa 4102851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 13328006 - 13327942
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaa 150  Q
    |||||||||||||| |||||| |||| | |||||||||| | |||||||| ||||||| ||||||    
T  13328006 agtttcaagtcaaagttactaatttaaacttcttaacatgtgcaaatttgcacatgatagaaaaa 13327942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 2161510 - 2161565
Alignment:
Q  96 caaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||| ||||||||||| |||||||||||| | |||||||| ||||||| |||||||    
T  2161510 caaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 2161565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 6818145 - 6818195
Alignment:
Q  101 ttactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    ||||||||||| | |||||||||| |||||||||| ||||||| |||||||    
T  6818145 ttactattttaaacttcttaacatgtacaaatttgcacatgatagaaaaac 6818195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 31812226 - 31812291
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||| |||||||||||||| |||||| | ||||||| || | |||||||| ||||||| |||||||    
T  31812226 agttccaagtcaaaattaccattttaaacttcttaatatgtgcaaatttgcacatgatagaaaaac 31812291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 9759197 - 9759142
Alignment:
Q  96 caaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||| ||||||||||| |||||||||||| | |||||||||||||||| |||||||    
T  9759197 caaagttactattttaaatttcttaacatgtgcaaatttgtacatgatagaaaaac 9759142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 23051447 - 23051382
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||||||||||||| |||||| |||| |||||||| ||| | |||||||| ||||||| |||||||    
T  23051447 agtttcaagtcaaagttactactttaaatttcttatcatgtgcaaatttgcacatgatagaaaaac 23051382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 53961437 - 53961501
Alignment:
Q  88 tttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaact 152  Q
    ||||||||||||||||||| |||| | |||||||||| | |||||||| ||| ||| ||||||||    
T  53961437 tttcaagtcaaaattactaatttaaacttcttaacatgtgcaaatttgcacacgatagaaaaact 53961501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 40049681 - 40049736
Alignment:
Q  96 caaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||||||||||||||| |||||||||||| | |||||||| |||| || |||||||    
T  40049681 caaaattactattttaaatttcttaacatgtgcaaatttgcacataatagaaaaac 40049736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 50352425 - 50352480
Alignment:
Q  96 caaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||||||||||||||| |||||||||||| | |||||||| | ||||| |||||||    
T  50352425 caaaattactattttaaatttcttaacatgtgcaaatttgcatatgatagaaaaac 50352480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 27756674 - 27756731
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgat 143  Q
    ||||||||| |||| || ||| |||| ||||||||||||||  |||||||||||||||    
T  27756674 agtttcaagacaaacttgctactttaaatttcttaacatttgtaaatttgtacatgat 27756731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 27362509 - 27362569
Alignment:
Q  91 caagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||||||||||||| | |||| | |||||||||| | |||||||| ||||||| |||||||    
T  27362509 caagtcaaaattaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 27362569  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 40330349 - 40330295
Alignment:
Q  97 aaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    ||||||||||||||| |||| ||||||| |||||||| | |||||||||||||||    
T  40330349 aaaattactattttaaattttttaacatgtacaaattcgcacatgattgaaaaac 40330295  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 2571391 - 2571446
Alignment:
Q  96 caaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||| ||||||||||| |||||||||||| | |||||||| ||||||| |||||||    
T  2571391 caaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 2571446  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 10307889 - 10307944
Alignment:
Q  96 caaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||| ||||||||||| |||||||||||| | |||||||| ||||||| |||||||    
T  10307889 caaatttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 10307944  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 23523059 - 23523124
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||| |||||||||||||| | |||| | |||||||||| | |||||||| ||||||| |||||||    
T  23523059 agttccaagtcaaaattaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 23523124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 38389560 - 38389625
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||| |||||||||||||| | |||| | |||||||||| | |||||||| ||||||| |||||||    
T  38389560 agttccaagtcaaaattaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 38389625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 38248474 - 38248420
Alignment:
Q  97 aaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    ||||||||||||||| |||||||||||| | |||||||| ||||||| |||||||    
T  38248474 aaaattactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 38248420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 8770949 - 8770894
Alignment:
Q  88 tttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgat 143  Q
    ||||||||||||||||||| |||| | |||||||||| | |||||||| |||||||    
T  8770949 tttcaagtcaaaattactactttaaacttcttaacatgtgcaaatttgcacatgat 8770894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 14377537 - 14377600
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaa 149  Q
    |||||||||||||| |||||| |||| | |||||| ||| |||||||||| ||||||| |||||    
T  14377537 agtttcaagtcaaagttactactttaaacttcttatcatgtacaaatttgcacatgatagaaaa 14377600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 24729632 - 24729577
Alignment:
Q  96 caaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||| ||||||||||| |||||||||||| | |||||||| ||||||| |||||||    
T  24729632 caaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 24729577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 4576391 - 4576326
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    ||||||||  ||||||| |||||||| |||||||||||| | | |||||| ||||||| |||||||    
T  4576391 agtttcaatacaaaatttctattttaaatttcttaacatatgcgaatttgcacatgatagaaaaac 4576326  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 9747430 - 9747495
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||| |||| |||||||||||||||| | |||||||||| |  ||||||| ||||||| |||||||    
T  9747430 agttccaagacaaaattactattttaaacttcttaacatgtgaaaatttgcacatgatagaaaaac 9747495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 34214003 - 34213950
Alignment:
Q  97 aaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaa 150  Q
    ||||||||||||||| |||||||||||| | |||||||| ||| ||| ||||||    
T  34214003 aaaattactattttaaatttcttaacatgtgcaaatttgcacacgatagaaaaa 34213950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 15190986 - 15191043
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgat 143  Q
    ||||||||||||||||||||| |||| | |||||||||| | ||||||| ||||||||    
T  15190986 agtttcaagtcaaaattactactttaaacttcttaacatgtgcaaatttatacatgat 15191043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 30839904 - 30839959
Alignment:
Q  96 caaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||| ||||||||||| |||||||||||| | |||||||| ||||||| |||||||    
T  30839904 caaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 30839959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 30893742 - 30893805
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaa 149  Q
    ||||| |||||||| ||||||||||| | |||||||||| | |||||||| ||||||| |||||    
T  30893742 agttttaagtcaaagttactattttaaacttcttaacatgtgcaaatttgcacatgatagaaaa 30893805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 36597702 - 36597757
Alignment:
Q  96 caaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||| ||||||||||| |||||||||||| | |||||||| ||||||| |||||||    
T  36597702 caaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 36597757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 23995470 - 23995416
Alignment:
Q  97 aaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    ||||||||||||||| | |||||||||| |||||||||| |||| || |||||||    
T  23995470 aaaattactattttaaacttcttaacatgtacaaatttgcacataatagaaaaac 23995416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 32020049 - 32019983
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaact 152  Q
    |||| |||| |||| |||| |||||| |||||||||||| | |||||||| ||||||| ||||||||    
T  32020049 agttccaagacaaacttaccattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaact 32019983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 11636844 - 11636909
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||||||||||||| |||||| |||| | |||||| ||| | |||||||| ||||||| |||||||    
T  11636844 agtttcaagtcaaagttactactttaaacttcttatcatgtgcaaatttgcacatgatagaaaaac 11636909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 41350315 - 41350372
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgat 143  Q
    |||| |||||||||||||||| |||| | |||||||||| | |||||||| |||||||    
T  41350315 agttccaagtcaaaattactactttaaacttcttaacatgtgcaaatttgcacatgat 41350372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 40513074 - 40513126
Alignment:
Q  96 caaaattactattttatatttcttaacatttacaaatttgtacatgattgaaa 148  Q
    |||| ||||||||||| |||| ||||||| | |||||||||||||||| ||||    
T  40513074 caaagttactattttaaattttttaacatgtgcaaatttgtacatgatagaaa 40513126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 23576479 - 23576414
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    ||||||||  |||| ||||||||||| |||||||||||| | |||||||| ||||||| |||||||    
T  23576479 agtttcaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 23576414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 1502775 - 1502720
Alignment:
Q  96 caaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||| ||||||||||| |||||||||||| | |||||||| ||||||| |||||||    
T  1502775 caaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 1502720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 30363060 - 30362995
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||| ||||||||| ||||||||||| |||| ||| ||| | |||||||| ||||||| |||||||    
T  30363060 agttccaagtcaaagttactattttaaatttgttatcatgtgcaaatttgcacatgatagaaaaac 30362995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 1366170 - 1366226
Alignment:
Q  96 caaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaact 152  Q
    |||||||||||||||| ||||||| |||| |  ||||||| ||||||| ||||||||    
T  1366170 caaaattactattttaaatttctttacatgtgtaaatttgcacatgatagaaaaact 1366226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 3853061 - 3853121
Alignment:
Q  91 caagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    ||||||||| |||||| |||| |||||||||||| | |||||||| ||||||| |||||||    
T  3853061 caagtcaaagttactactttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 3853121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 17552639 - 17552587
Alignment:
Q  99 aattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    ||||||||||||| |||||||||||| | |||||||| ||||||| |||||||    
T  17552639 aattactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 17552587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 14228181 - 14228126
Alignment:
Q  96 caaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||| ||||||||||| |||||||||||| | |||||||| ||||||| |||||||    
T  14228181 caaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 14228126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 28943824 - 28943769
Alignment:
Q  96 caaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    |||| ||||||||||| |||||||||||| | |||||||| ||||||| |||||||    
T  28943824 caaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 28943769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 27819692 - 27819627
Alignment:
Q  86 agtttcaagtcaaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaac 151  Q
    ||||| ||| ||||| ||| |||||| | |||||||||| | |||||||||||||||| |||||||    
T  27819692 agttttaagacaaaaatacaattttaaacttcttaacatgtgcaaatttgtacatgatagaaaaac 27819627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 24582 - 24526
Alignment:
Q  96 caaaattactattttatatttcttaacatttacaaatttgtacatgattgaaaaact 152  Q
    |||||||||||||||| ||||||| |||| |  ||||||| ||||||| ||||||||    
T  24582 caaaattactattttaaatttctttacatgtgtaaatttgcacatgatagaaaaact 24526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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