View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2872_low_7 (Length: 353)
Name: NF2872_low_7
Description: NF2872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2872_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 26731965 - 26731640
Alignment:
| Q |
18 |
tagacaacccaaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26731965 |
tagacaacccaaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttc |
26731866 |
T |
|
| Q |
118 |
atgtaaatatgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaacctttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26731865 |
atgtaaatatgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgacaaattatccgctaaagaacctttt |
26731766 |
T |
|
| Q |
218 |
tccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaactt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26731765 |
tccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaactt |
26731666 |
T |
|
| Q |
318 |
cagcaagaaattcactctctcctttg |
343 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
26731665 |
cagcaagaaattcactctctcctttg |
26731640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 26690654 - 26690329
Alignment:
| Q |
18 |
tagacaacccaaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26690654 |
tagacaacccaaaatccgctaccttgggttggtaattggagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttc |
26690555 |
T |
|
| Q |
118 |
atgtaaatatgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaacctttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26690554 |
atgtaaatatgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgacaaattatccgctaaagaacctttt |
26690455 |
T |
|
| Q |
218 |
tccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaactt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26690454 |
tccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaactt |
26690355 |
T |
|
| Q |
318 |
cagcaagaaattcactctctcctttg |
343 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
26690354 |
cagcaagaaattcactctctcctttg |
26690329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 26694815 - 26694490
Alignment:
| Q |
18 |
tagacaacccaaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26694815 |
tagacaacccaaaatccgctaccttgggttggtaattggagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttc |
26694716 |
T |
|
| Q |
118 |
atgtaaatatgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaacctttt |
217 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| | ||||||||||||| |
|
|
| T |
26694715 |
atgtaaataggcaagacactttgcagttccgagagcaattttgtacctcttaccccaattaagcgcatttgatgacaaattatcagttaaagaacctttt |
26694616 |
T |
|
| Q |
218 |
tccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaactt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26694615 |
tccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaagtt |
26694516 |
T |
|
| Q |
318 |
cagcaagaaattcactctctcctttg |
343 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
26694515 |
cagcaagaaattcactctcttctttg |
26694490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 26 - 336
Target Start/End: Original strand, 26750971 - 26751281
Alignment:
| Q |
26 |
ccaaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaat |
125 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26750971 |
ccaaaatcagctaccttcggttggtaatcggagtcaacaagtatgttttgcggttttatatcgcaatgcaaaatccactccaaacattcttcgtgtaaat |
26751070 |
T |
|
| Q |
126 |
atgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaacctttttccatgta |
225 |
Q |
| |
|
| ||||| | |||||||||||| | |||||| ||||||||||||||||||| |||| |||||||||||| |||||| ||||||| ||| ||||||||||| |
|
|
| T |
26751071 |
acgcaagtccctttgcagttcccatagcaatgttatacctcttaccccaatcaagttcatttgatgagagattatcagctaaagtacccttttccatgta |
26751170 |
T |
|
| Q |
226 |
ctcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaaga |
325 |
Q |
| |
|
|||| |||| |||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
26751171 |
ctcataaaccaacaatctatgctttccctcagcacaataaccccacataccaatcaaattcatgtggttaagccttccaatgatgctaacttcggcaaga |
26751270 |
T |
|
| Q |
326 |
aattcactctc |
336 |
Q |
| |
|
|| |||||||| |
|
|
| T |
26751271 |
aactcactctc |
26751281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 20 - 336
Target Start/End: Original strand, 26744040 - 26744356
Alignment:
| Q |
20 |
gacaacccaaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcat |
119 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
26744040 |
gacaaaccaaaatccgctaccttcggttggtaatcagagtcaacaagtatgttttgcggctttatatcacaatgcaaaatccactccaaacattcttcgt |
26744139 |
T |
|
| Q |
120 |
gtaaatatgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaacctttttc |
219 |
Q |
| |
|
||||||| ||||| | |||||||||||| | |||||| |||||||| |||| ||||| |||| ||||||||| | |||||| ||||||| ||| ||||| |
|
|
| T |
26744140 |
gtaaataagcaaggccctttgcagttcccatagcaatgttataccttttactccaatcaagtttatttgatgaaagattatcggctaaagtaccgttttc |
26744239 |
T |
|
| Q |
220 |
catgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttca |
319 |
Q |
| |
|
|||| |||| |||| |||||||| ||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
26744240 |
catgcactcgtaaaccaacaatctatgttttccctcagcacaatagccccacataccaattaagttcatgtggttaagccttccaatgatgcttacttca |
26744339 |
T |
|
| Q |
320 |
gcaagaaattcactctc |
336 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
26744340 |
gcaagaaactcactctc |
26744356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 26698639 - 26698962
Alignment:
| Q |
18 |
tagacaacccaaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttc |
117 |
Q |
| |
|
||||||| |||||||| |||||||| ||||| ||||| ||||||| ||||||||||| |||||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
26698639 |
tagacaaaccaaaatctgctaccttaggttgataatccgagtcaacaagtatgttttgtggctttatatcgcaatgcaaaatccactccaaacactcttc |
26698738 |
T |
|
| Q |
118 |
atgtaaatatgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaacctttt |
217 |
Q |
| |
|
|||||||| ||||||| |||||||||||| | |||||| |||||||| |||||||||| |||| || ||||||||| |||||| ||||||| ||| ||| |
|
|
| T |
26698739 |
gtgtaaataagcaagaccctttgcagttcccatagcaatgttataccttttaccccaatcaagttcacttgatgagagattatcagctaaagtaccattt |
26698838 |
T |
|
| Q |
218 |
tccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaactt |
317 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||| |||||||| |||||||| || |||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
26698839 |
tccatgtactcataaaccaacaatctgtgttttccctcggcacaataaccccacattcctatcaaattcatgtgattaagccttccaatgatgctaactt |
26698938 |
T |
|
| Q |
318 |
cagcaagaaattcactctctcctt |
341 |
Q |
| |
|
|||||||||| ||| || |||||| |
|
|
| T |
26698939 |
cagcaagaaactcattccctcctt |
26698962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 26733802 - 26734125
Alignment:
| Q |
18 |
tagacaacccaaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttc |
117 |
Q |
| |
|
||||||| |||||||| |||||||| ||||| ||||| ||||||| ||||||||||| |||||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
26733802 |
tagacaaaccaaaatctgctaccttaggttgataatccgagtcaacaagtatgttttgtggctttatatcgcaatgcaaaatccactccaaacactcttc |
26733901 |
T |
|
| Q |
118 |
atgtaaatatgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaacctttt |
217 |
Q |
| |
|
|||||||| ||||||| |||||||||||| | |||||| |||||||| |||||||||| |||| || ||||||||| |||||| ||||||| ||| ||| |
|
|
| T |
26733902 |
gtgtaaataagcaagaccctttgcagttcccatagcaatgttataccttttaccccaatcaagttcacttgatgagagattatcagctaaagtaccattt |
26734001 |
T |
|
| Q |
218 |
tccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaactt |
317 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||| |||||||| |||||||| || |||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
26734002 |
tccatgtactcataaaccaacaatctgtgttttccctcggcacaataaccccacattcctatcaaattcatgtgattaagccttccaatgatgctaactt |
26734101 |
T |
|
| Q |
318 |
cagcaagaaattcactctctcctt |
341 |
Q |
| |
|
|| ||||||| ||| || |||||| |
|
|
| T |
26734102 |
caacaagaaactcattccctcctt |
26734125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 26737027 - 26737350
Alignment:
| Q |
18 |
tagacaacccaaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttc |
117 |
Q |
| |
|
||||||| |||||||| || ||||| ||| | ||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
26737027 |
tagacaaaccaaaatctgcaaccttaggtcgataatcagagtcaacaagtatgttttgcggctttatatcgcaatgcaaaatccactccaaacactcttc |
26737126 |
T |
|
| Q |
118 |
atgtaaatatgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaacctttt |
217 |
Q |
| |
|
||||||||| |||||||| ||||||||||| | |||||| ||| ||||| ||||||| |||| |||||||||||| |||||| ||||||| ||| ||| |
|
|
| T |
26737127 |
atgtaaataagcaagacattttgcagttcctatagcaataccatatctctttccccaatcaagttcatttgatgagagattatcagctaaagtaccattt |
26737226 |
T |
|
| Q |
218 |
tccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaactt |
317 |
Q |
| |
|
|||||||||||| |||| |||||| | ||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26737227 |
tccatgtactcataaaccaacaatttatgttttccctcagcacaataaccccacattccaattaaattcatgtggttaagccttccaatgatgctaactt |
26737326 |
T |
|
| Q |
318 |
cagcaagaaattcactctctcctt |
341 |
Q |
| |
|
| |||||||| ||||| ||||||| |
|
|
| T |
26737327 |
ctgcaagaaactcactgtctcctt |
26737350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 26713791 - 26714114
Alignment:
| Q |
18 |
tagacaacccaaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttc |
117 |
Q |
| |
|
||||||| |||||||| || ||||| ||| | |||||| |||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
26713791 |
tagacaaaccaaaatctgcaaccttaggtcgataatcatagtcaacaagtatgttttgcggctttatatcgcaatgcaaaatccactccaaacactcttc |
26713890 |
T |
|
| Q |
118 |
atgtaaatatgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaacctttt |
217 |
Q |
| |
|
||||||||| |||||||| ||||||||||| | |||||| ||| ||||| ||||||| |||| |||||||| ||| |||||| ||||||| ||| ||| |
|
|
| T |
26713891 |
atgtaaataagcaagacattttgcagttcctatagcaataccatatctctttccccaatcaagttcatttgataagagattatcagctaaagtaccattt |
26713990 |
T |
|
| Q |
218 |
tccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaactt |
317 |
Q |
| |
|
|||||||||||| |||| |||||| | ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26713991 |
tccatgtactcataaaccaacaatttatgttttccctcagcacaataaccccacattccaatcaaattcatgtggttaagccttccaatgatgctaactt |
26714090 |
T |
|
| Q |
318 |
cagcaagaaattcactctctcctt |
341 |
Q |
| |
|
| |||||||| ||||| ||||||| |
|
|
| T |
26714091 |
ctgcaagaaactcactatctcctt |
26714114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 26675427 - 26675715
Alignment:
| Q |
18 |
tagacaacccaaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttc |
117 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26675427 |
tagacaacccaaaatctactattttgggtcggtaatcagagtcaataagtatgttttgaggctttatatcacaatgcaaaatccactccaaacattcttc |
26675526 |
T |
|
| Q |
118 |
atgtaaatatgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaacctttt |
217 |
Q |
| |
|
|||||||||||||||| |||||| ||||| |||||||| ||||||||||||||||||| ||||||||||||||||| || || ||||||||||| ||| |
|
|
| T |
26675527 |
atgtaaatatgcaagagcctttgcggttcctagagcaatgttatacctcttaccccaatcaagtgcatttgatgagaggttttcagctaaagaacccttt |
26675626 |
T |
|
| Q |
218 |
tccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaat |
306 |
Q |
| |
|
|| | | |||| ||||| ||||||||||||||||| || |||||||||| |||| ||||| || ||||| ||||| ||| ||||||| |
|
|
| T |
26675627 |
tctacgaactctaaaaccaacaatctgtgttttccggctaaacaataccccaacatgccaattaagttcatatggttgagcattccaat |
26675715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 307
Target Start/End: Original strand, 47212387 - 47212491
Alignment:
| Q |
203 |
gctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttc |
302 |
Q |
| |
|
||||||||||| || |||||| ||||| | || | || ||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
47212387 |
gctaaagaaccattatccatgaactcatacacaagcattctatgttttccctctgcacaataaccccacatttcaatcaaattcatgtggttaagctttc |
47212486 |
T |
|
| Q |
303 |
caatg |
307 |
Q |
| |
|
||||| |
|
|
| T |
47212487 |
caatg |
47212491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 47212252 - 47212304
Alignment:
| Q |
68 |
atgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatg |
120 |
Q |
| |
|
|||||||| ||||| | |||||||||||||||||||||||||| |||||||| |
|
|
| T |
47212252 |
atgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcatg |
47212304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 21108433 - 21108112
Alignment:
| Q |
20 |
gacaacccaaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcat |
119 |
Q |
| |
|
||||| |||||||| |||| |||||| ||| | | ||| |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21108433 |
gacaatccaaaatcggctaacttgggctggaagttagaatcaagaagtatgttttgtggctttatatcacaatgcaaaatccactccaaacattcttcat |
21108334 |
T |
|
| Q |
120 |
gtaaatatgc-aagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaaccttttt |
218 |
Q |
| |
|
||| |||||| || || | |||| || | | ||||||| ||||| |||| ||||| |||| ||| | || || || || ||||||||||| |||| |
|
|
| T |
21108333 |
gtagatatgctaaaactc-ttgctattgataaaacaattttgtaccttttactccaatcaagtttattagccgataagttttcggctaaagaaccatttt |
21108235 |
T |
|
| Q |
219 |
ccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttc |
318 |
Q |
| |
|
|||||||||| |||| || | ||| | ||||||||| || ||||| |||||||| | |||||||||||||| |||||||||||||||| | ||||| |
|
|
| T |
21108234 |
ccatgtactcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatgattcctacttc |
21108135 |
T |
|
| Q |
319 |
agcaagaaattcactctctcctt |
341 |
Q |
| |
|
||| |||||||||| ||||||| |
|
|
| T |
21108134 |
agctagaaattcaccttctcctt |
21108112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 21098816 - 21098502
Alignment:
| Q |
18 |
tagacaacccaaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttc |
117 |
Q |
| |
|
||||||| ||||||||||||| |||||||| | | | ||| |||| ||||| |||||||||||||| |||||||| |||||||| |||||||||||||| |
|
|
| T |
21098816 |
tagacaatccaaaatccgctaacttgggttcgaagttagaatcaagaagtatattttgcggctttatatcacaatgtaaaatccattccaaacattcttc |
21098717 |
T |
|
| Q |
118 |
atgtaaatatgc-aagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaaccttt |
216 |
Q |
| |
|
||||| |||||| || || | || | || | ||||||||| ||||| |||| ||||| |||| ||| | || || || || ||||||||||| || |
|
|
| T |
21098716 |
atgtagatatgctaaaactc-ttcctattgataaagcaattttgtaccttttactccaatcaagtttattagccgataagttttcggctaaagaaccatt |
21098618 |
T |
|
| Q |
217 |
ttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaact |
316 |
Q |
| |
|
|||||||||||| |||| || | ||| | ||||||||| || ||||| |||||||| | |||||||||||||| |||||||||||||||| | ||| |
|
|
| T |
21098617 |
ttccatgtactcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatgattcctact |
21098518 |
T |
|
| Q |
317 |
tcagcaagaaattcac |
332 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
21098517 |
tcagctagaaattcac |
21098502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 65 - 330
Target Start/End: Original strand, 18658599 - 18658870
Alignment:
| Q |
65 |
agtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaatatgcaagacacttt-gcagttccgagagcaattttatac |
163 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||| || ||| ||||| || ||||| | |||||| | |||| |
|
|
| T |
18658599 |
agtatgttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagataagctaga-actttagctgttcctaaagcaatatcatac |
18658697 |
T |
|
| Q |
164 |
ctcttaccccaattaagtgcatttg------atgagaaattatccgctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctg |
257 |
Q |
| |
|
|| |||| ||| | ||||| || | |||| | ||| || |||||||| || ||||||||||||||| | || || | ||| || || || || | |
|
|
| T |
18658698 |
cttttactccagtcaagtgtgttagttttagatgaaagattttcagctaaagatccattttccatgtactcatataccaaaagtctatgcttaccttcag |
18658797 |
T |
|
| Q |
258 |
cacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaattc |
330 |
Q |
| |
|
||||||| ||||||||| ||||||| |||||||||||||||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
18658798 |
cacaatatccccacatatcaatcaagttcatgtggttaagccgtccaatgatgcttacttcagcaagaaattc |
18658870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 21130390 - 21130705
Alignment:
| Q |
18 |
tagacaacccaaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttc |
117 |
Q |
| |
|
||||||| |||||||| |||| |||||| || | | ||| |||| ||||| ||||| |||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
21130390 |
tagacaatccaaaatcggctaacttgggctgaaagttagaatcaagaagtatattttgaggctttatatcacaatgcaaaatccattccaaacattcttc |
21130489 |
T |
|
| Q |
118 |
atgtaaatatgc-aagacactttgcagttccgagagcaattttatacctcttaccccaattaagt------gcatttgatgagaaattatccgctaaaga |
210 |
Q |
| |
|
||||| |||||| || || | | || ||||| | |||||| | |||||| ||| ||||| |||| | || ||||| | ||| ||||||||||| |
|
|
| T |
21130490 |
atgtagatatgctaaaactc-tagctgttcctaaagcaatatcataccttttagtccaatcaagtgtgttggttttggatgaaagattttccgctaaaga |
21130588 |
T |
|
| Q |
211 |
acctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacg |
310 |
Q |
| |
|
||| ||||||||||||||| | || || | ||| || || || || ||||||| |||||||| ||||||||||||||||||||||| || |||||| | |
|
|
| T |
21130589 |
accattttccatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaaattcatgtggttaagcttttcaatgatg |
21130688 |
T |
|
| Q |
311 |
ctaacttcagcaagaaa |
327 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
21130689 |
cttacttcagcaagaaa |
21130705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 21123262 - 21123377
Alignment:
| Q |
18 |
tagacaacccaaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttc |
117 |
Q |
| |
|
||||||| |||||||| |||| ||||||||| | | ||| |||| ||||| ||||| |||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
21123262 |
tagacaatccaaaatctgctaacttgggttgaaagttagaatcaagaagtatattttgaggctttatatcacaatgcaaaatccactccatacattcttc |
21123361 |
T |
|
| Q |
118 |
atgtaaatatgcaaga |
133 |
Q |
| |
|
||||| ||| |||||| |
|
|
| T |
21123362 |
atgtagataagcaaga |
21123377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 21111430 - 21111748
Alignment:
| Q |
18 |
tagacaacccaaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttc |
117 |
Q |
| |
|
||||||| |||||||| |||| |||||| || | | ||| |||| ||||| ||||| |||||||| ||||||||||| ||||| || | ||||||||| |
|
|
| T |
21111430 |
tagacaatccaaaatctgctaacttgggctgaaagttagaatcaagaagtatattttgaggctttatatcacaatgcaatatccattcgagacattcttc |
21111529 |
T |
|
| Q |
118 |
atgtaaatatgcaagacacttt-gcagttccgagagcaattttatacctcttaccccaattaagtgcatttg------atgagaaattatccgctaaaga |
210 |
Q |
| |
|
||||| ||| |||||| ||| | || ||||| | |||||| | |||||| |||| ||||| ||||| || | |||| | ||| || |||||||| |
|
|
| T |
21111530 |
atgtagataagcaaga-actctagctgttcctaaagcaatatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaaga |
21111628 |
T |
|
| Q |
211 |
acctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacg |
310 |
Q |
| |
|
|| ||||||||||||||| | || || | ||| || || || || |||||||| |||||||| | ||||| |||||||||||||||| |||||||| |
|
|
| T |
21111629 |
tccattttccatgtactcatataccaaaagtctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggttaagccgtccaatgata |
21111728 |
T |
|
| Q |
311 |
ctaacttcagcaagaaattc |
330 |
Q |
| |
|
|| ||||| ||||||||||| |
|
|
| T |
21111729 |
cttacttcggcaagaaattc |
21111748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 306
Target Start/End: Original strand, 29213149 - 29213252
Alignment:
| Q |
203 |
gctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttc |
302 |
Q |
| |
|
||||||||||| || | |||| ||||| | || |||| ||| ||| |||||||||||||||| ||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
29213149 |
gctaaagaaccattatacatgaactcatagacaaacattctatgtattccctctgcacaataaccccacaattcaatcaaattcatgtggttaagctttc |
29213248 |
T |
|
| Q |
303 |
caat |
306 |
Q |
| |
|
|||| |
|
|
| T |
29213249 |
caat |
29213252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 29213014 - 29213065
Alignment:
| Q |
68 |
atgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcat |
119 |
Q |
| |
|
|||||||| ||||| | |||||||||||||||||||||||||| ||||||| |
|
|
| T |
29213014 |
atgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcat |
29213065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 39132346 - 39132242
Alignment:
| Q |
18 |
tagacaacccaaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttc |
117 |
Q |
| |
|
||||||| ||||| || |||| ||||||||| || | ||| |||| ||||| ||||| |||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
39132346 |
tagacaatccaaagtctgctaacttgggttgatagttagaatcaagaagtatattttgaggctttatatcacaatgtaaaatccactccaaacattcttc |
39132247 |
T |
|
| Q |
118 |
atgta |
122 |
Q |
| |
|
||||| |
|
|
| T |
39132246 |
atgta |
39132242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 327
Target Start/End: Complemental strand, 39132100 - 39132031
Alignment:
| Q |
258 |
cacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaa |
327 |
Q |
| |
|
||||||| |||||||| |||| || |||||||| || |||||||| |||| ||| |||||||||||||| |
|
|
| T |
39132100 |
cacaatatccccacatttcaattaagttcatgtgattgagccttccgatgatgcttacttcagcaagaaa |
39132031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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