View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2873_high_1 (Length: 371)
Name: NF2873_high_1
Description: NF2873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2873_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 13 - 355
Target Start/End: Complemental strand, 31268583 - 31268243
Alignment:
| Q |
13 |
aatattatcattgcgtcaaaactccccttcatattaatatttaatcaaaattcttaaagtaacgttacttactgaagttattgtgatgccaccttatcga |
112 |
Q |
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| T |
31268583 |
aatattatcattgcgtcaaaactccccttcatattaatatttaatcaaaattctcaaagtaacgttacttactgaagtcattgtgatgccaccttatcga |
31268484 |
T |
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| Q |
113 |
acctatgatgatccccaaggttgaattagtgaaaaactatgtgtcagagtgtgtggaacgaaaaaccatgtgttagtttgtcaaactcaacaaatatatc |
212 |
Q |
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| T |
31268483 |
acctatgatgatccccaaggttgaactagtgaaaaactatgtgtcacagtgtgtggaacgaaaaaccatgtgttagtttgtcaaactcaacaaatatatc |
31268384 |
T |
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| Q |
213 |
ttgttagaggtgctcttggagtttcccatttagaggcagtttaataacattttgttgttaatttaaagtttatactaataatgtatccggaaaaacataa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| |
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| T |
31268383 |
ttgttagaggtgctcttggagtttcccatttagaggcag-ttaataacattttgttgttaatttaaagtttatactaataatgtatcggaaaaaacgtaa |
31268285 |
T |
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| Q |
313 |
ctagtaaagatatcacaaacagggacggatccaccataagact |
355 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
31268284 |
ctagtaaagatatcacaagcagggac-gatccaccataagact |
31268243 |
T |
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