View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2873_high_10 (Length: 338)
Name: NF2873_high_10
Description: NF2873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2873_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 313
Target Start/End: Original strand, 51856304 - 51856603
Alignment:
| Q |
14 |
taagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaagaattcttattatgtataataatgttgctacttttagttaaattgatttt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856304 |
taagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaagaattcttattatgtataataatgttgctacttttagttaaattgatttt |
51856403 |
T |
|
| Q |
114 |
atttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcttacaaaataacagtaatagttaacattacattgaactttgagact |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856404 |
atttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcttacaaaataacagtaatagttaacattacattgaactttgagact |
51856503 |
T |
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| Q |
214 |
gattttcatctctaattttcgtctnnnnnnncagcaatataagagtggcttgttacccttcaaactagattgattaaacctgttttaaaacgagattgat |
313 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
51856504 |
gattttcatctctaattttcgtctaaaaaaacagcaatataagagtggcttgttacccttcaaactagatcgattaaacctgatttaaaacgagattgat |
51856603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 279
Target Start/End: Original strand, 51856680 - 51856711
Alignment:
| Q |
248 |
caatataagagtggcttgttacccttcaaact |
279 |
Q |
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| T |
51856680 |
caatataagagtggcttgttacccttcaaact |
51856711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 8945490 - 8945755
Alignment:
| Q |
14 |
taagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaagaattcttattatgtataataatgttgctacttttagttaaattgatttt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945490 |
taagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaagaattcttattatgtataataatgttgctacttttagttaaattgatttt |
8945589 |
T |
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| Q |
114 |
atttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcttacaaaataacagtaatagttaacattacattgaactttgagact |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945590 |
atttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcttacaaaataacagtaatagttaacattacattgaactttgagact |
8945689 |
T |
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| Q |
214 |
gattttcatctctaattttcgtctnnnnnnncagcaatataagagtggcttgttacccttcaaact |
279 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8945690 |
gattttcatctataattttcgtctaaaaaaacagcaatataagagtggcttgttacccttcaaact |
8945755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 109 - 225
Target Start/End: Complemental strand, 128536 - 128421
Alignment:
| Q |
109 |
attttatttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcttacaaaataacagtaatagttaacattacattgaactttg |
208 |
Q |
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||||| |||||||||||| |||||||||||||||||||||||||||| |||| |||||| ||||||| ||||||||||||||| | |||||||||||||| |
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| T |
128536 |
attttttttttctgtaatacctttgacctattgttgcaataaattgttaagagtattgc-tacaaaagaacagtaatagttaataatacattgaactttg |
128438 |
T |
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| Q |
209 |
agactgattttcatctc |
225 |
Q |
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||||| ||||||||||| |
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| T |
128437 |
agactaattttcatctc |
128421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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