View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2873_high_13 (Length: 318)

Name: NF2873_high_13
Description: NF2873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2873_high_13
NF2873_high_13
[»] chr7 (1 HSPs)
chr7 (1-298)||(33016765-33017062)


Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 33016765 - 33017062
Alignment:
Q  1 atcgaaaaaaggtggctaatagaaggcgtacctcgatggattttggacctatgaatagctccttgtgaaactctatgcttgataagacagagatgttctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33016765 atcgaaaaaaggtggctaatagaaggcgtacctcgatggattttggacctatgaatagctccttgtgaaactctatgcttgataagacagagatgttctt 33016864  T
Q  101 tgcacatatgatatagaggtaaggcacttcatttggaaaatcggaccaactgcttcattattgaggcagacgttgtagttgacagaggtcacacataacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33016865 tgcacatatgatatagaggtaaggcacttcatttggaaaatcggaccaactgcttcattattgaggcagacgttgtagttgacagaggtcacacataacc 33016964  T
Q  201 aaacaaatccatttattcattgattggagaagcctgcctttgacataacatctgagaggtatcgcccatcaacttgatcaaaagcttttgatgatgtc 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33016965 aaacaaatccatttattcattgattggagaagcctgcctttgacataacatctgagaggtatcgcccatcaacttgatcaaaagcttttgattatgtc 33017062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University