View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2873_high_14 (Length: 316)
Name: NF2873_high_14
Description: NF2873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2873_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 4 - 304
Target Start/End: Complemental strand, 39607903 - 39607600
Alignment:
| Q |
4 |
tcatgtcctatccatatgtgggtatttagttggtgttgaaatattcgcgagtatttacacgtctcgattaatatttnnnnnnnt---gtatttatgtaaa |
100 |
Q |
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| T |
39607903 |
tcatgtcctatccatatgtgggtatttagttggtgttgaaatattcgcgagtatttgcacgtctcgattaatattttttttaaaaaagtatttatgtaaa |
39607804 |
T |
|
| Q |
101 |
ataaaataaaatttgaagaatgtaannnnnnnnattaaattatgtaaattacttcatatttgtttgacaacaacattattatctatcgaacatataattt |
200 |
Q |
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| T |
39607803 |
ataaaataaaatttgaagaatgtaatttcttttattaaattatgtagattacttcatatttgtttgacaacaacattattatctatcgaacatataattt |
39607704 |
T |
|
| Q |
201 |
ctttatgcttttctnnnnnnnnnntaataattcttcctcctttcnnnnnnnntgtcttcgtgaaagtac-aaaaagatagtttctttcttttcttacaga |
299 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
39607703 |
ctttatgcttttctaaaaaaataataataattcttcctcctttc-aaaaaaatgtcttcgtgaaagtacaaaaaagatagtttctttcttttcttacaaa |
39607605 |
T |
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| Q |
300 |
ataat |
304 |
Q |
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||||| |
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| T |
39607604 |
ataat |
39607600 |
T |
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