View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2873_high_1_N (Length: 524)
Name: NF2873_high_1_N
Description: NF2873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2873_high_1_N |
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Alignment Details
Target: chr6 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 30 - 495
Target Start/End: Complemental strand, 5469219 - 5468754
Alignment:
| Q |
30 |
agaaactggaacatcaatgacacaacctatttaagaacaccaacatcacgtgatttcgtcacagcagatataacagctacgaggaacataactgtaacac |
129 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||| ||||||| |||||| ||||||| ||||||| ||||| ||||||||||||||||| |
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| T |
5469219 |
agaaactggaacatcaatgacacaacctatttaaaatcaccaacggcacgtgacttcgtcccagcagacataacaggtacgatgaacataactgtaacac |
5469120 |
T |
|
| Q |
130 |
ctgattacatagcaccaaaagacctcttcagatcatcacgtgacttaggaaccaatgccactctaaacagactcttaaacctaacatgggaattcccggt |
229 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
5469119 |
ctgattacatagcaccaaaagacctcttcaaatcatcacgtgacttaggagccagtgccactcttaacagactcttaaacctaacatgggaattccccgt |
5469020 |
T |
|
| Q |
230 |
tgattccggcttcacttacttcatcaggctccatttctgtgaactcgacccgaacataactagtgcaggtgatcgagtcttcatcgtttatttacaagga |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
5469019 |
tgattccggcttcacttacttcatcaggctccatttctgtgaactcgaccccaacataaccagtgcaggtgaccgagtcttcatcgtttatttacaagga |
5468920 |
T |
|
| Q |
330 |
aatgtggctgaagaacgagctgatgttatgcattggacccaaaatcagaaaggtcttgcagtgcaacgaaactatgcagttttgattccaaagagtgaaa |
429 |
Q |
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|||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5468919 |
aatgtggctgaagaactagctgatgttatgaaatggacccaaaatcagaaaggtcttgcagtgcaacgaaactacgcagttttgattccaaagagtgaaa |
5468820 |
T |
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| Q |
430 |
gtaatagtaacaaaaaagttaacctcaaaattgaaatgcatcctcttgatggtagaggctccaaat |
495 |
Q |
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| T |
5468819 |
gtaatagtaacaaaaaagttaacctcaaaattgaaatgcatcctcttgatggtagaggctccaaat |
5468754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 28 - 473
Target Start/End: Original strand, 5478355 - 5478800
Alignment:
| Q |
28 |
tcagaaactggaacatcaatgacacaacctatttaagaacaccaacatcacgtgatttcgtcacagcagatataacagctacgaggaacataactgtaac |
127 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||| || ||| || ||| ||||||| ||| ||| ||||||||| || |||||||| |
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| T |
5478355 |
tcagaaactggaacatcaatgactcaacctatttaagaacaccaacagcaattgactttgtcccagcagacatatcaggtacgaggaatatcactgtaac |
5478454 |
T |
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| Q |
128 |
acctgattacatagcaccaaaagacctcttcagatcatcacgtgacttaggaaccaatgccactctaaacagactcttaaacctaacatgggaattcccg |
227 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
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| T |
5478455 |
acctgattacatagcaccaaaagacctcttcaaatcatcacgtgacttaggaaccaatgctactctcaacagactcttgaacctaacatgggaattcccc |
5478554 |
T |
|
| Q |
228 |
gttgattccggcttcacttacttcatcaggctccatttctgtgaactcgacccgaacataactagtgcaggtgatcgagtcttcatcgtttatttacaag |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||| ||||||||| |||||||||||| |
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| T |
5478555 |
gttgattccggcttcacttacttcatcaggctccatttttgtgaactcgaccccaacataactcgtgcaggtgatagagtcttcactatttatttacaag |
5478654 |
T |
|
| Q |
328 |
gaaatgtggctgaagaacgagctgatgttatgcattggacccaaaatcagaaaggtcttgcagtgcaacgaaactatgcagttttgattccaaagagtga |
427 |
Q |
| |
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|||||||||||| ||||| |||||||||| || | ||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
5478655 |
gaaatgtggctgtagaacaagctgatgttttgaaatggacacaaaatcaaaaaggtcttgctgtgcaacgaaactacgcagttttgattccaaagagtga |
5478754 |
T |
|
| Q |
428 |
aagtaatagtaacaaaaaagttaacctcaaaattgaaatgcatcct |
473 |
Q |
| |
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||||||||||||||||||||||||||| | |||| ||||||||||| |
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| T |
5478755 |
aagtaatagtaacaaaaaagttaacctaacaattcaaatgcatcct |
5478800 |
T |
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