View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2873_high_4 (Length: 476)
Name: NF2873_high_4
Description: NF2873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2873_high_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 6 - 476
Target Start/End: Complemental strand, 6545797 - 6545318
Alignment:
| Q |
6 |
tgtgtcagtagatgcagtaatgtgaaatcaacaagacattttgttcatgttccgtgactttgttggttctttgtggcatttagtgtggaattgactaggt |
105 |
Q |
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| T |
6545797 |
tgtgtcagtagatgcagtgatgtgaaatcaacaagacattttgttcctgttctgtgactttgttggttctttgtggcatttagtgcggaattggctaggt |
6545698 |
T |
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| Q |
106 |
ttttcttcggc---------ataataggtatatcggatcagttggtttagtttggcaatttgatagggttctcaagagtatgcgatccttattaactctc |
196 |
Q |
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| T |
6545697 |
ttttctttggctcatccagcagaataggtatatcggatcagttggtttagtttgacactttggtagggttctcaagagtatgtgatccttattaactctc |
6545598 |
T |
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| Q |
197 |
atacgactagcgtgtacttgagttatttaaaaggaaatgaacgacaagatttttaataatacaacaaactatttacctaaacttctagagaatatt-agt |
295 |
Q |
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| T |
6545597 |
atacgactagcgtgtacttgagttatttaaaagaaaatgaacaacaagatttttaataatacaacaggctatttacctaaacttctagagaatattaagt |
6545498 |
T |
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| Q |
296 |
tacttacnnnnnnnngaagtaagtaagctattaagttacttacttttgtgtggctaaaggtaaaatttgcaagtattacttttggattttgttatcacaa |
395 |
Q |
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| T |
6545497 |
tacttac-tttttttgaagtaagtaagctattaagttacttacttttgtgtggctaaaggtaaaatttgcaagtattgcttttggttttggttatcacaa |
6545399 |
T |
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| Q |
396 |
ccggcacatgaatcctcttatgtgcttaggtattggatacttttgttcattttgttttccgctccccgttcaaactatgtt |
476 |
Q |
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| T |
6545398 |
ccggcacatgaatcctcttatgtgcttaggtattggatacttttgttccttttgttttccgttctccgttcaaactatgtt |
6545318 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 33555510 - 33555424
Alignment:
| Q |
338 |
cttttgtgtggctaaaggtaaaattt-gcaagtattacttttggattttg-ttatcacaaccggcacatgaatcctcttatgtgctt |
422 |
Q |
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| T |
33555510 |
cttttgtgtggctaaagacaaaattttgcaagcattgcttttgagttttgattatcacaagtgacacatgaatcctcttatgtgctt |
33555424 |
T |
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